aschampion
Neuroscience, connectomics, image processing
University of Cambridge & MRC LMBCambridge, UK
Pinned Repositories
2020hemibrain_examples
Code examples for Schlegel, Bates et al. (2020)
acardona-scripts
A collection of scripts related to neural circuit analysis and image processing for python, Fiji, TrakEM2, CATMAID, and others.
bitbar-janelia-lsf
BitBar plugin to display the status of jobs on the Janelia LSF cluster
diluvian
Flood filling networks for segmenting electron microscopy of neural tissue
h2n5
HTTP 2 N5: Serve N5 datasets over HTTP as tiled image stacks
n5-reference-data
DVC registry for N5 test and verification data
n5-wasm
WASM bindings to the Rust implementation of N5
n5gest
CLI utilities for N5 files
rust-n5
Rust implementation of the N5 "Not HDF5" tensor file system format
schemer
A database schema migration library with DAG dependencies
aschampion's Repositories
aschampion/diluvian
Flood filling networks for segmenting electron microscopy of neural tissue
aschampion/rust-n5
Rust implementation of the N5 "Not HDF5" tensor file system format
aschampion/h2n5
HTTP 2 N5: Serve N5 datasets over HTTP as tiled image stacks
aschampion/schemer
A database schema migration library with DAG dependencies
aschampion/n5-wasm
WASM bindings to the Rust implementation of N5
aschampion/n5gest
CLI utilities for N5 files
aschampion/bitbar-janelia-lsf
BitBar plugin to display the status of jobs on the Janelia LSF cluster
aschampion/2020hemibrain_examples
Code examples for Schlegel, Bates et al. (2020)
aschampion/bitwarden-ssh-auto-login
Auto ssh login with bitwarden saved password & totp pin
aschampion/bmm-2017-zebrafish
aschampion/CATMAID
Collaborative Annotation Toolkit for Massive Amounts of Image Data
aschampion/chezmoi-dotfiles
Dotfiles for use with chezmoi
aschampion/cookiecutter-cruft-poetry-tox-pre-commit-ci-cd
A Modern DevSecOps-centric Cookiecutter template for Python packages and/or projects
aschampion/dask
Parallel computing with task scheduling
aschampion/gh-actions
Common reusable workflows
aschampion/homebrew-misc
personal homebrew tap
aschampion/homesick-dotfiles
Dotfiles for use with homesick
aschampion/IO
aschampion/iocage-plugin-calibre-web
Artifact files for calibre-web iocage plugin
aschampion/napari-simple-3d-animation
aschampion/navis
Python 3 library for Neuron Analysis and Visualization
aschampion/nblast-rs
aschampion/rstar
R*-tree library for the rust ecosystem
aschampion/scripts
aschampion/slack-latexbot
A LaTeX bot made for a personal Slack group.
aschampion/solvers
Wrapper classes for Gurobi, CPLEX, and SCIP ILP and IQP solvers
aschampion/spark-lmb
Scripts for using Spark on LMB's HPC
aschampion/ttc
aschampion/zarrita
aschampion/zfp
Compressed numerical arrays that support high-speed random access