Pinned Repositories
AnaerobeWorkshop
Hands-on portion of the 1-day Anaerobe microbiome workshop covered by Dr. Laura Cox (Harvard Medical School), Dr. Casey Theriot (NC State University College of Veterinary Medicine), and Dr. Anna Seekatz (University of Michigan Medical School).
C.innocuum-diversity
This repository contains raw data and code related to the manuscript, "Prevalence and diversity of Clostridium innocuum in the human gut".
Comparative_Genomics
Microbial Bioinformatics Workshop
demo-lab-notebook
An example electronic notebook
ERIN.recurrence
This repository contains all files related to the manuscript 'Fecal microbial dynamics during recurrent and nonrecurrent Clostridium difficile infection'
markdown-cv
a simple template to write your CV in a readable markdown file and use CSS to publish/print it.
mouse.fiber
This repository includes commands for figures created in the manuscript 'Dietary fiber-deprived gut microbiota degrades the protective mucus barrier and promotes pathogen susceptibility' (2016)
mouseRM
Code and files for generation of figures in Mouse Relapse paper
Rush_CX.study
This project aims to identify differences in the fecal microbiota in patients admitted to one long-term acute care hospital using 16S rRNE gene-based Illumina sequencing. This page describes the code utilized to analyze this data.
UMFMT
This repository contains the raw data and code used to analyze the microbiome of patients with recurrent Clostridium difficile infection treated with fecal microbiota transplantation.
aseekatz's Repositories
aseekatz/AnaerobeWorkshop
Hands-on portion of the 1-day Anaerobe microbiome workshop covered by Dr. Laura Cox (Harvard Medical School), Dr. Casey Theriot (NC State University College of Veterinary Medicine), and Dr. Anna Seekatz (University of Michigan Medical School).
aseekatz/ERIN.recurrence
This repository contains all files related to the manuscript 'Fecal microbial dynamics during recurrent and nonrecurrent Clostridium difficile infection'
aseekatz/UMFMT
This repository contains the raw data and code used to analyze the microbiome of patients with recurrent Clostridium difficile infection treated with fecal microbiota transplantation.
aseekatz/C.innocuum-diversity
This repository contains raw data and code related to the manuscript, "Prevalence and diversity of Clostridium innocuum in the human gut".
aseekatz/mouse.fiber
This repository includes commands for figures created in the manuscript 'Dietary fiber-deprived gut microbiota degrades the protective mucus barrier and promotes pathogen susceptibility' (2016)
aseekatz/Rush_CX.study
This project aims to identify differences in the fecal microbiota in patients admitted to one long-term acute care hospital using 16S rRNE gene-based Illumina sequencing. This page describes the code utilized to analyze this data.
aseekatz/Comparative_Genomics
Microbial Bioinformatics Workshop
aseekatz/demo-lab-notebook
An example electronic notebook
aseekatz/markdown-cv
a simple template to write your CV in a readable markdown file and use CSS to publish/print it.
aseekatz/mouseRM
Code and files for generation of figures in Mouse Relapse paper
aseekatz/R_practice
aseekatz/SI_mesalamine
This project aimed to characterize the microbiota of the proximal small intestine using 16S rRNA gene-based sequencing. Code deposited here is for a submitted manuscript.