Pinned Repositories
BILL
Bioinformatics_Learning_lab
RetroSom
RRC
Drosophila melanogaster Recombination Rate Calculator (RRC)
T-lex3
TEFLoN2
TrEMOLO
Transposable Elements MOvement detection using LOng reads
BREC
Boundaries - Recombiation Rate estimator
bulkfile-scripts
Scripts useful for working with bulk FlyBase data locally.
dmel-longread-assembly
Analysis code accompanying the paper "Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements." PLoS One. (2014).
drosophila_assembly_pipelines
Pipelines for Drosophila genome assembly and analysis
asfistonlavie's Repositories
asfistonlavie/PanTE_human
asfistonlavie/ScaffLinker
Scaffolding tools
asfistonlavie/Eywa.io
Evolutionary genomics of Aedes Aegypti mosquitoe's in West indies: impact of transposable element in their adaptation
asfistonlavie/TEannot_curated
asfistonlavie/TEFLoN2
asfistonlavie/BILL
Bioinformatics_Learning_lab
asfistonlavie/TrEMOLO
Transposable Elements MOvement detection using LOng reads
asfistonlavie/Meta-analysis_scripts
Commands and scripts for methods reproducibility
asfistonlavie/TEFLoN-documentation
asfistonlavie/funannotate
Eukaryotic Genome Annotation Pipeline
asfistonlavie/T-lex3
asfistonlavie/drosophila_assembly_pipelines
Pipelines for Drosophila genome assembly and analysis
asfistonlavie/NGS-map
A general pipeline for mapping next-gen sequencing reads and calling variants
asfistonlavie/online_poster_room
Online Poster Room for scientific posters and conferences.
asfistonlavie/BREC
Boundaries - Recombiation Rate estimator
asfistonlavie/RRC
Drosophila melanogaster Recombination Rate Calculator (RRC)
asfistonlavie/bulkfile-scripts
Scripts useful for working with bulk FlyBase data locally.
asfistonlavie/RetroSom
asfistonlavie/Metallaxis
A Python GUI VCF viewer for SNP, indels, and TE.
asfistonlavie/intro_programming
A set of IPython notebooks and learning resources for an Introduction to Programming class, focusing on Python.
asfistonlavie/dmel-longread-assembly
Analysis code accompanying the paper "Illumina TruSeq synthetic long-reads empower de novo assembly and resolve complex, highly-repetitive transposable elements." PLoS One. (2014).