ashakru
Coding clinician researching RNA biology, micropeptides and ctDNA | Bye-Fellow, St Catharine's College, Cambridge| Likes LOTR 🧙🏼♂️and 35mm film cameras 📷
University of Cambridge
Pinned Repositories
ashakit
Useful, time-saving scripts for everyday use
ashakru
Personal repository
BDC
R package for Burkitt lymphoma and diffuse large B-cell lymphoma classifier
BilbORF
R package for performing differential ORF usage analysis
ComplexHeatmap
Make Complex Heatmaps
ConferenceWatch
howtocode
Useful resources for learning bioinformatics
lymphDDX3X
Bioinformatic analysis of DDX3X mutations in Burkitt Lymphoma
ORFLine
A project to discover novel open reading frames in immune system
solaris
Analysis of aberrant splicing of SGK1 in DLBCL for Gao et al. 2021
ashakru's Repositories
ashakru/howtocode
Useful resources for learning bioinformatics
ashakru/lymphDDX3X
Bioinformatic analysis of DDX3X mutations in Burkitt Lymphoma
ashakru/ORFLine
A project to discover novel open reading frames in immune system
ashakru/ashakit
Useful, time-saving scripts for everyday use
ashakru/ashakru
Personal repository
ashakru/BDC
R package for Burkitt lymphoma and diffuse large B-cell lymphoma classifier
ashakru/BilbORF
R package for performing differential ORF usage analysis
ashakru/ComplexHeatmap
Make Complex Heatmaps
ashakru/ConferenceWatch
ashakru/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
ashakru/dna-seq-gatk-variant-calling
This Snakemake pipeline implements the GATK best-practices workflow
ashakru/DockerizeMaxQuant
A script that scrapes the latest MaxQuant version from its website, builds, and pushes a docker container containing it and its license to Dockerhub.
ashakru/GAMBLR
Set of standardized functions to operate with genomic data
ashakru/gatk4-data-processing
Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools
ashakru/labookR
Electronic Lab Notebook in R
ashakru/lcr-modules
Collection of standard analytical pipelines for genomic and transcriptomic data
ashakru/max_quant_hack
A simple script to modify MaxQuant xml files.
ashakru/ORF-RATER
Regression-based annotation of protein-coding sequences from ribosome profiling data
ashakru/ORFik
ashakru/ORFquant
An R package for Splice-aware quantification of translation using Ribo-seq data
ashakru/Ribo-seQC
A comprehensive analysis tool for Ribo-seq and small RNA-seq data
ashakru/RiboStream_bpipe
Compact Bpipe pipeline for processing and quality control of Ribo-Seq datasets
ashakru/seq-format-conversion
Workflows for converting between sequence data formats
ashakru/snakePixies
Snakemake wrappers for common bioinformatics tasks
ashakru/xtail
Genome-wide assessment of differential translations with ribosome profiling data