ashdederich
Scientific Consultant for the Center for High Performance Computing specializing in bioinformatics, R, and Nextflow.
University of Utah CHPCSalt Lake City, UT
Pinned Repositories
IGVF-Cell-Painting-Scripts
useful scripts for cell painting data analysis
blast_summaries
a few optional functions for getting the appropariate nodes from blast summaries
editing_gbkFiles
to edit gbk files after pseudofinder exports .gff file
genefilter
An R script that parses through a .gbk file and returns a .csv file of the list of genes that are present
pycytominer
remove_Origin
a short bash script to remove Origin sequences from gbk files, which can clash with the R .gbk file parser, parseGenBank()
Symbiont_genomeAssembly
My scripts that utilize nextflow for automating and parallelizing symbiont genome assemblies.
website
Nextflow public web site
website
Nextflow public web site
slurm-lectures
Introduction to Slurm lecture and the hands-on Running Jobs at the CHPC with Slurm lecture and hands-on material.
ashdederich's Repositories
ashdederich/Symbiont_genomeAssembly
My scripts that utilize nextflow for automating and parallelizing symbiont genome assemblies.
ashdederich/website
Nextflow public web site
ashdederich/IGVF-Cell-Painting-Scripts
useful scripts for cell painting data analysis
ashdederich/pycytominer
ashdederich/editing_gbkFiles
to edit gbk files after pseudofinder exports .gff file
ashdederich/genefilter
An R script that parses through a .gbk file and returns a .csv file of the list of genes that are present
ashdederich/remove_Origin
a short bash script to remove Origin sequences from gbk files, which can clash with the R .gbk file parser, parseGenBank()
ashdederich/blast_summaries
a few optional functions for getting the appropariate nodes from blast summaries