Pinned Repositories
amplicon-biostatistics
alpha diversity, beta diversity, and other biostatistics for amplicon data
amplicon-metagenome-metadata-preprocessing
Cleans up and converts continuous metadata into categorical metadata for more meaningful correlation analyses and beta diversity visualizations. Outputs include cleaned continuous and categorical metadata tables
BASH_ZSHELL
bash/zshell scripts for random bioinformatics needs
built-iab
Repository for An Introduction to Applied Bioinformatics built notebooks.
Fayetteville-Green-Lake-sediment-trap-amplicon-processing
UNIX and qiime2 pipeline to process 250 bp x 2 paired end reads
fluorescence-in-situ-hybridization-probe-analyses
Determines the specificity and coverage of fluorescence in situ hybridization probes with competitor probes accounted for (if applicable). Designed to analyze Asgard Archaea probes but may be used for any targets
image_analysis
metagenome-only
network_analysis
NetworkAnalysis
ashleybc's Repositories
ashleybc/amplicon-biostatistics
alpha diversity, beta diversity, and other biostatistics for amplicon data
ashleybc/amplicon-metagenome-metadata-preprocessing
Cleans up and converts continuous metadata into categorical metadata for more meaningful correlation analyses and beta diversity visualizations. Outputs include cleaned continuous and categorical metadata tables
ashleybc/BASH_ZSHELL
bash/zshell scripts for random bioinformatics needs
ashleybc/built-iab
Repository for An Introduction to Applied Bioinformatics built notebooks.
ashleybc/Fayetteville-Green-Lake-sediment-trap-amplicon-processing
UNIX and qiime2 pipeline to process 250 bp x 2 paired end reads
ashleybc/fluorescence-in-situ-hybridization-probe-analyses
Determines the specificity and coverage of fluorescence in situ hybridization probes with competitor probes accounted for (if applicable). Designed to analyze Asgard Archaea probes but may be used for any targets
ashleybc/image_analysis
ashleybc/metagenome-only
ashleybc/network_analysis
ashleybc/NetworkAnalysis
ashleybc/statistics_other
ashleybc/time_series
ashleybc/topic-functional-annotation
A repository for the lessons and notebooks used for Binder tutorials