Pinned Repositories
bio-test-artifacts
getCRISPRY
CRISPR Target Design
inferelator_ng
Inferelator refactor and generalization.
inferelator_run_scripts
Run scripts for inferelator projects
ScHINY
Shiny scripts for summary SS data
inferelator
Task-based gene regulatory network inference using single-cell or bulk gene expression data conditioned on a prior network.
inferelator-prior
Gene regulatory network inference using DNA-binding motifs and chromatin accessibility data.
inferelator-velocity
Calculate dynamic (time-dependent) latent parameters from single-cell expression data
sparse_dot
Python wrapper for Intel Math Kernel Library (MKL) matrix multiplication
supirfactor-dynamical
Build dynamical deep models for transcriptional biophysics
asistradition's Repositories
asistradition/inferelator_run_scripts
Run scripts for inferelator projects
asistradition/getCRISPRY
CRISPR Target Design
asistradition/inferelator_ng
Inferelator refactor and generalization.
asistradition/ScHINY
Shiny scripts for summary SS data
asistradition/bio-test-artifacts
asistradition/biological_grn_simulator
asistradition/CellOracle
This is the alpha version of the CellOracle package
asistradition/deplete-R
Identifies specific degenerate loci out of sequencing files and builds PWMs based on the sequences
asistradition/fastqTomat0
Tools for fiddling with single-cell data
asistradition/go-model
Implementation of SVC modeling of protein function based on HMM domain scoring
asistradition/inferelator-similarity
asistradition/PyDESeq2
A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.
asistradition/sparse_dot_mkl-feedstock
A conda-smithy repository for sparse_dot_mkl.
asistradition/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
asistradition/wipo-st25-parse
Biopython module to parse WIPO ST.25 sequence files