Pinned Repositories
Bioinformatics-thesis-project
This research project is based on comparative genomics and phylogenetics analysis. These codes were used to analyze genomic data and show evidence of co-evolution between Lactobacillus bacteria and bacteriophages.
Bioinformatics-training-collection
A collection of resources for learning about tools and programming languages related to Bioinformatics
Biostatistics
Projects on statistical concepts such as model fitting and selection, mixed / hierarchical models, longitudinal models and models for missing data.
Dashboard--using-Dash-plotly
This script uses Dash/Plotly library to produce an interactive dashboard for simultaneous analysis for multiple datasets.
deep_trader
This project uses reinforcement learning on stock market and agent tries to learn trading. The goal is to check if the agent can learn to read tape. The project is dedicated to hero in life great Jesse Livermore.
diagnostics_exome_reporting
Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.
javaProject
A java project to design a road navigation system with different conditions on various types of roads. Features of object-oriented programming such as polymorphism, dynamic binding and inheritance were used in this project. Equally, defensive, total and nominal programming techniques were extensively used in this project
Statistical_learning-with-R
Projects on statistical learning concepts such as linear regression, classification techniques(logistic regression, LDA and KNN), resampling methods, linear model selection, lasso and ridge regression, GAM, decision trees, SVM, PCA and clustering techniques
Support-Vector-Machines
The Least Squares SVM (LSSVM) MATLAB toolkit was used in this project.
TimeSeries
This script combines multiple datasets into a dictionary of data frames and produces time series subplots of any set of chosen variables whilst making use of pandas resampling and rolling functions.
asouzujoseph's Repositories
asouzujoseph/bamgineer
Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets
asouzujoseph/diagnostics_exome_reporting
Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.
asouzujoseph/WES_ShinyDiscover
A Shiny interface to filter and identify variants of interest from whole exome data
asouzujoseph/variant_calling_pipeline
Comprehensive SNP/indel/structural variant calling pipeline for model organisms
asouzujoseph/CNV-Sim
Copy Number Variations (CNV) Simulator
asouzujoseph/WumpusWorld
Stuart Russel and Peter Norvig's Wumpus World environment...
asouzujoseph/deep_trader
This project uses reinforcement learning on stock market and agent tries to learn trading. The goal is to check if the agent can learn to read tape. The project is dedicated to hero in life great Jesse Livermore.
asouzujoseph/GATK-pipeline
A shell script which implements GATK pipeline for variant calling.
asouzujoseph/SNPSVM
A support vector machine for calling variants from next-gen sequencing data