astrdhr

PhD student in @stracquadaniolab: deciphering codon usage using genomics/transcriptomics and language modelling.

University of Edinburgh

Pinned Repositories

bioinformatics-coding-cw
Various Python functions to automate common molecular biology analytical processes.
Language:Python0 2 00
dengue-transcriptomics-cw
Transcriptomic analysis of patients infected with acute dengue virus and during convalescence.
Language:R0 2 00
fair-grade-calculator
Java-based fair grade calculator: calculates a grade for individual team members based on their team contributions.
Language:Java0 3 21
HTFome
Django-based web application to explore and analyse Human Transcription Factors
Language:HTML0 1 00
metagenomics-soil
BSc project: metagenomic analysis of urban park soil. Breakdown of some of the code I used can be viewed on this website:
Language:Shell1 2 00
ML-for-crohns-disease-cw
Building a machine learning model to rank sample types based on their usefulness in diagnosing Crohn’s Disease.
Language:R0 2 00
peptide-detectability-predictor
MSc project: Peptide detectability prediction using a sample-specific transformer network
Language:Jupyter Notebook2 2 00
HTFome
Group project for Bioinformatics masters degree
Language:HTML0 4 02
cubseq-nf
CUBseq analyses codon usage bias from RNA-seq data, producing robust CUB estimates that account for variants transcriptome-wide and in highly expressed genes.
Language:R2 1 01
scilenzio-yeast-nf
Analysis of transcriptional repression in synthetic yeast chromosome using RNA-seq data (post-sc2.0).
Language:Nextflow0 1 00

astrdhr/peptide-detectability-predictor
MSc project: Peptide detectability prediction using a sample-specific transformer network
Language:Jupyter Notebook2 2 00
astrdhr/metagenomics-soil
BSc project: metagenomic analysis of urban park soil. Breakdown of some of the code I used can be viewed on this website:
Language:Shell1 2 00
astrdhr/bioinformatics-coding-cw
Various Python functions to automate common molecular biology analytical processes.
Language:Python0 2 00
astrdhr/dengue-transcriptomics-cw
Transcriptomic analysis of patients infected with acute dengue virus and during convalescence.
Language:R0 2 00
astrdhr/fair-grade-calculator
Java-based fair grade calculator: calculates a grade for individual team members based on their team contributions.
Language:Java0 3 21
astrdhr/HTFome
Django-based web application to explore and analyse Human Transcription Factors
Language:HTML0 1 00
astrdhr/ML-for-crohns-disease-cw
Building a machine learning model to rank sample types based on their usefulness in diagnosing Crohn’s Disease.
Language:R0 2 00