Pinned Repositories
app_service
Application execution service.
asw_learn
For teaching git
aswarren.github.io
aswarren site
Batch-Fasta-Interpro
Run interproscan on a multi-sequence fasta file via EBI webservices.
bionetworks-1
Models and code for bionetworks synethesis
biopython
Official git repository for Biopython (converted from CVS)
bvbrc_grab_features
Given genome ids get the associated protein features using the BVBRC API
bvbrc_metacats
bvbrc_rnaseq
pangenome_graphs
Constructing pan genome graphs from "protein family" assignments
aswarren's Repositories
aswarren/pangenome_graphs
Constructing pan genome graphs from "protein family" assignments
aswarren/app_service
Application execution service.
aswarren/asw_learn
For teaching git
aswarren/aswarren.github.io
aswarren site
aswarren/bionetworks-1
Models and code for bionetworks synethesis
aswarren/bvbrc_grab_features
Given genome ids get the associated protein features using the BVBRC API
aswarren/bvbrc_metacats
aswarren/bvbrc_rnaseq
aswarren/bvbrc_website
Repository for the BV-BRC website.
aswarren/clustertracker_va
Code for a webpage displaying introductions and resulting clusters of coronavirus across the USA. Customized for CA Dept. of Public Health.
aswarren/GenGraph
A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
aswarren/GPAA_Capstone
aswarren/grc
The Genome Reverse Compiler (GRC) is an automated annotation tool designed for prokaryotic genomes.
aswarren/matplotlib
matplotlib: plotting with Python
aswarren/ncov-clades-schema
Renders SVG schema of SARS-CoV-2 clade as defined by Nextstrain
aswarren/p3_api
aswarren/p3_fqutils
aswarren/p3_fqutils_orig
aswarren/p3_msa
MSA variance service
aswarren/p3_web
aswarren/pango_alias_table
Make an aliasing table of pangolin lineages using the hierarchy to partition all lineages to the most specific alias label that applies to the row.
aswarren/pango_aliasor
Utility to alias and dealias pango lineages
aswarren/patric_cli_sif
singularity container for patric cli
aswarren/phyloview
a phylogenetic tree viewer using D3
aswarren/Prok-tuxedo
Wrapper for running the tuxedo pipeline for prokaryotes.
aswarren/sra_import
SRA import for PATRIC
aswarren/sra_import_orig
SRA import for PATRIC
aswarren/transit
Repository for the TRANSIT and TPP tools developed by the Ioerger Lab
aswarren/vcf-4-population-genomics-team-warren
aswarren/Workspace