atc3's Stars
voila-dashboards/voila
Voilà turns Jupyter notebooks into standalone web applications
FluxML/Zygote.jl
21st century AD
kharchenkolab/conos
R package for the joint analysis of multiple single-cell RNA-seq datasets
ohmyzsh/ohmyzsh
🙃 A delightful community-driven (with 2,400+ contributors) framework for managing your zsh configuration. Includes 300+ optional plugins (rails, git, macOS, hub, docker, homebrew, node, php, python, etc), 140+ themes to spice up your morning, and an auto-update tool that makes it easy to keep up with the latest updates from the community.
ctlab/fgsea
Fast Gene Set Enrichment Analysis
compomics/ThermoRawFileParser
Thermo RAW file parser that runs on Linux/Mac and all other platforms that support Mono
stan-dev/cmdstanpy
CmdStanPy is a lightweight interface to Stan for Python users which provides the necessary objects and functions to compile a Stan program and fit the model to data using CmdStan.
stan-dev/pystan2
PyStan, the Python interface to Stan
vega/voyager
Visualization Tool for Data Exploration
apache/echarts
Apache ECharts is a powerful, interactive charting and data visualization library for browser
996icu/996.ICU
Repo for counting stars and contributing. Press F to pay respect to glorious developers.
rascati/unused-words-search
[WIP] "are there any english words left?"
fossasia/visdom
A flexible tool for creating, organizing, and sharing visualizations of live, rich data. Supports Torch and Numpy.
thomasp85/patchwork
The Composer of ggplots
SlavovLab/tissue-ptr
Code for analyzing post-transcriptional regulation across human tissues (Franks et al., 2017 DOI: 10.1371/journal.pcbi.1005535)
SlavovLab/HIquant
HIquant: An algorithm for quantifying homologous proteins and proteoforms from bottom-up mass-spec data
Nesvilab/philosopher
PeptideProphet, PTMProphet, ProteinProphet, iProphet, Abacus, and FDR filtering
GrayHuffman/Automated_MS_Data_Processor
Powershell script for automated processing of .RAW files via MaxQuant
MaayanLab/biojupies-plugins
User-submitted RNA-seq data analysis tools for BioJupies.
MaayanLab/biojupies
Automated generation of tailored bioinformatics Jupyter Notebooks via a user interface.
kevinaltschuler/rapid-game
SlavovLab/DART-ID_2018
Code for figures/data analysis of the DART-ID publication
statisticalbiotechnology/triqler
The triqler (TRansparent Identification-Quantification-linked Error Rates)'s source and example code
AllonKleinLab/SPRING_dev
SlavovLab/DO-MS
An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.
SlavovLab/DART-ID
DART-ID: retention time alignment and peptide identification confidence updates
bioconda/bioconda-recipes
Conda recipes for the bioconda channel.
proteomicsyates/ProteinClusterQuant
Protein Cluster Quant is a Java software for the analysis of complex proteomics samples (quantitative or not). It helps to reduce the redundancy of the peptide-to-protein relationship and to visualize the results in a bipartite network (Cytoscape).
yuin/gopher-lua
GopherLua: VM and compiler for Lua in Go
stan-dev/loo
loo R package for approximate leave-one-out cross-validation (LOO-CV) and Pareto smoothed importance sampling (PSIS)