atc3

atc3's Stars

• facebookresearch/segment-anything

  The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

  Language:Jupyter Notebook46.9k3056625.6k

• google-deepmind/alphafold

  Open source code for AlphaFold.

  Language:Python12.3k2208502.2k

• CleverRaven/Cataclysm-DDA

  Cataclysm - Dark Days Ahead. A turn-based survival game set in a post-apocalyptic world.

  Language:C++10.3k32328.2k4.1k

• jpochyla/psst

  Fast and multi-platform Spotify client with native GUI

  Language:Rust8.4k47322215

• man-group/dtale

  Visualizer for pandas data structures

  Language:TypeScript4.7k74589400

• ReactTooltip/react-tooltip

  React Tooltip Component

  Language:TypeScript3.6k26792528

• duerrsimon/bioicons

  A library of free open source icons for science illustrations in biology and chemistry

  Language:Vue1.3k174473

• mgmeyers/obsidian-zotero-integration

  Insert and import citations, bibliographies, notes, and PDF annotations from Zotero into Obsidian.

  Language:TypeScript1k1237755

• hail-is/hail

  Cloud-native genomic dataframes and batch computing

  Language:Python974562.4k243

• EmilHvitfeldt/paletteer

  🎨🎨🎨 Collection of most color palettes in a single R package

  Language:R9251713645

• stardist/stardist

  StarDist - Object Detection with Star-convex Shapes

  Language:Python89826227218

• nf-core/rnaseq

  RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

  Language:Nextflow874151644697

• vega/vega-embed

  Publish Vega visualizations as embedded web components with interactive parameters.

  Language:TypeScript3902719385

• thelovelab/DESeq2

  Differential expression of RNA-seq data using the Negative Binomial

  Language:R352238290

• saalfeldlab/n5

  Not HDF5

  Language:Java159174622

• samsinai/FLEXS

  Fitness landscape exploration sandbox for biological sequence design.

  Language:Jupyter Notebook1539722

• lmb-freiburg/Unet-Segmentation

  The U-Net Segmentation plugin for Fiji (ImageJ)

  Language:Java86169425

• knossos-project/knossos

  KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural morphology and connectivity.

  Language:C++731750119

• W-L/ProblematicSites_SARS-CoV2

  Language:Python48121415

• PoonLab/covizu

  Rapid analysis and visualization of coronavirus genome variation

  Language:JavaScript45643020

• pachterlab/sircel

  Identify cell barcodes from single-cell genomics sequencing experiments

  Language:Jupyter Notebook41121914

• arokem/pubmed-gpt

  Use gpt to summarize abstracts for a pubmed query

  Language:Python38105

• funkelab/daisy

  Block-wise task scheduling for large nD volumes.

  Language:Python2691516

• vector-engineering/covidcg

  A COVID-19 CoV Genetics (CG) browser to inform therapeutics development

  Language:JavaScript2653395

• janelia-cellmap/heinrich-2021a

  Resources for Heinrich et al., 2021

  18353

• janelia-cellmap/fibsem-tools

  Tools for handling FIB-SEM data and annotations

  Language:Python173218

• mattasmith/SCHEMA-RASPP

  RASPP algorithm for structure-guided protein recombination

  Language:Python83110

• josemduarte/cmview

  CMView: protein contact map visualization and analysis

  Language:Java7504

• vector-engineering/AAV_capsid_receptor

  Companion repository for Targeting AAV vectors to the CNS via de novo engineered capsid-receptor interactions paper

  Language:Jupyter Notebook6312

• vector-engineering/plotplot

  Drag and drop plotting, data selection, and filtering

  Language:JavaScript20