PoonLab/covizu

Issues

• Update HUNePi models

  #539 opened 3 months ago by ArtPoon
  55

• Add HUNePi summary statistics to lineage CSV

  #541 opened 3 months ago by ArtPoon
  1

• How do we handle lineages that have been reclassified?

  #540 opened 3 months ago by ArtPoon
  0

• Switch default dropdown setting to number of infections

  #534 opened 3 months ago by ArtPoon
  0

• Weird region name in barplot

  #535 opened 3 months ago by ArtPoon
  1

• Add pylint to sniff for PEP8 compliance

  #507 opened 4 months ago by ArtPoon
  17

• Error retrieving a record from the database

  #532 opened 4 months ago by GopiGugan
  2

• Error generating epicov data

  #523 opened 7 months ago by GopiGugan
  4

• CORS policy blocking fetch request of lab/submitted info

  #526 opened 7 months ago by ArtPoon
  7

• Missing a lot of sequences

  #528 opened 7 months ago by ArtPoon
  6

• Sequences with no mutations

  #530 opened 7 months ago by ArtPoon
  0

• Search by accession number is broken

  #527 opened 7 months ago by GopiGugan
  3

• HUNePi results are not being reported in lineage_stats CSV download

  #524 opened 7 months ago by ArtPoon
  1

• Model is predicting low numbers for nearly all lineages

  #497 opened 8 months ago by ArtPoon
  12

• Move backend processing back from Paphlagon to BEVi

  #499 opened 8 months ago by ArtPoon
  21

• Re-run cluster analyses only for lineages that have changed

  #493 opened 9 months ago by ArtPoon
  5

• Tips in timetree are being rendered outside of panel

  #512 opened 9 months ago by ArtPoon
  12

• Search functionality is broken

  #518 opened 9 months ago by GopiGugan
  0

• Node server crashed due to a failed search

  #522 opened 9 months ago by GopiGugan
  2

• XBB tree not rooting on XBB

  #515 opened 9 months ago by ArtPoon
  15

• Front-end changes need to be ported to epicov branch

  #509 opened 10 months ago by ArtPoon
  2

• Servers are offline due to malware attack on network

  #516 opened 10 months ago by ArtPoon
  1

• Tree labels are being cut off

  #513 opened 10 months ago by GopiGugan
  1

• Page load failure

  #511 opened 10 months ago by ArtPoon
  3

• Containerize Covizu Front-End for Docker Swarm

  #486 opened a year ago by GopiGugan
  17

• Provide option to run batch.py without using a database

  #508 opened a year ago by GopiGugan
  1

• Restore local database for extracted features

  #485 opened a year ago by ArtPoon
  54

• Issues depositing data into VirusSeq bucket

  #506 opened a year ago by ArtPoon
  1

• Build separate tree for XBB lineages

  #489 opened a year ago by ArtPoon
  11

• Rect elements not properly scaled

  #496 opened a year ago by GopiGugan
  4

• Update Apache Rewrite rule

  #500 opened a year ago by GopiGugan
  1

• epicov: File transfer failing in batch.py script

  #495 opened a year ago by GopiGugan
  4

• Lineage-specific alignment

  #494 opened a year ago by ArtPoon
  1

• Enhance apply_features function for more efficiency

  #488 opened a year ago by SandeepThokala
  7

• Need a new toy dataset for front end devs

  #490 opened a year ago by ArtPoon
  5

• Add a spinner wheel when beadplot is rendering

  #491 opened a year ago by GopiGugan
  3

• incorporate hunipie predictive model

  #472 opened a year ago by ArtPoon
  5

• Recombinant lineages with alias are displayed within the time-scaled tree

  #477 opened a year ago by yexiao-cheng
  5

• local.py script has not been updated

  #483 opened a year ago by ArtPoon
  3

• Update treetime v0.8.0 to latest (v0.10.1)

  #481 opened 2 years ago by ArtPoon
  1

• Deprecate batch_utils.py:beadplot_serial

  #479 opened 2 years ago by ArtPoon
  0

• Proxy errors when trying to access the website

  #475 opened 2 years ago by bonnielu
  14

• epicov: empty tips on time-scaled tree

  #478 opened 2 years ago by ArtPoon
  4

• Problems installing CoVizu backend on an Ubuntu system

  #476 opened 2 years ago by ArtPoon
  6

• virusseq: fix mutations in tooltip and migrate mutation table

  #469 opened 2 years ago by ArtPoon
  4

• Propose reducing update frequency from 3 days to one week

  #474 opened 2 years ago by ArtPoon
  1

• epicov: update front-end to use promises

  #465 opened 2 years ago by ArtPoon
  4

• Cypress: Tests passing in Electron Browser only

  #462 opened 2 years ago by nav-mohan
  4

• epicov: Front-end isn't displaying any recombinant lineages

  #468 opened 2 years ago by GopiGugan
  0

• epicov: unable to convert clusters.json to epicov format

  #464 opened 2 years ago by GopiGugan
  1