ArtPoon
Professor, Virus Evolution and Bioinformatics Department of Pathology, Western University
@PoonLabCanada
Pinned Repositories
BioID
Source files for online resources of Bioinformatics of Infectious Diseases course
ggfree
ggplot2-style plots with base R graphics
gotoh2
Lightweight and customizable Python/C extension for pairwise alignment of genetic sequences using the Gotoh algorithm
hyphy
HyPhy: Hypothesis testing using Phylogenies
kamphir
Phylogenetic inference using a tree-shape kernel in an Approximate Bayesian Computation framework
covizu
Rapid analysis and visualization of coronavirus genome variation
Kaphi
Kernel-embedded ABC-SMC for phylodynamic inference
MiCall-Lite
Pipeline for processing FASTQ data from an Illumina MiSeq for human RNA virus (HIV, hepatitis C virus) genotyping
hyphy
HyPhy: Hypothesis testing using Phylogenies
ArtPoon's Repositories
ArtPoon/ggfree
ggplot2-style plots with base R graphics
ArtPoon/BioID
Source files for online resources of Bioinformatics of Infectious Diseases course
ArtPoon/kamphir
Phylogenetic inference using a tree-shape kernel in an Approximate Bayesian Computation framework
ArtPoon/gotoh2
Lightweight and customizable Python/C extension for pairwise alignment of genetic sequences using the Gotoh algorithm
ArtPoon/hyphy
HyPhy: Hypothesis testing using Phylogenies
ArtPoon/BelleJS
Generate BEAST XML analysis files using a BEAUTI-like JavaScript interface
ArtPoon/latex-cv
A LaTeX CV with minor tweaks to moderncv template
ArtPoon/preprints
Public access to TeX, scripts and data for manuscripts in preparation
ArtPoon/tex-cihr
A LaTeX template for CIHR Project Grant applications
ArtPoon/dynamics-evolution-indico
Indico customization files for dynamicsevolution.org
ArtPoon/mathsheets.js
A simple JavaScript/HTML5 web applet for generating basic math exercise sheets
ArtPoon/pixelcraft
JavaScript code for converting video game sprite PNGs to cross-stitch patterns
ArtPoon/spacewar-js
JavaScript implementation of the DOS game SpaceWar
ArtPoon/anchre
Code for the Gates/RSA methods bakeoff
ArtPoon/bioinfo
Assorted collection of bioinformatic scripts
ArtPoon/constellations
ArtPoon/Covid19Canada
Epidemiological Data from the COVID-19 Outbreak in Canada
ArtPoon/Creative-Commons-Markdown
Markdown-formatted Creative Commons licenses
ArtPoon/flu_frequencies
ArtPoon/iupmBayes
Bayesian estimation of infectious units per million (IUPM) from viral outgrowth assay-based sequence data
ArtPoon/makebst
A small web script (JS and PHP) for interfacing with Patrick Daly's custom-bib package for customizing LaTeX bibliography styles
ArtPoon/netabc
Fitting contact network models to phylogenies with kernel-ABC
ArtPoon/pangolin
Software package for assigning SARS-CoV-2 genome sequences to global lineages.
ArtPoon/phydynR
ArtPoon/sc2rf
SARS-Cov-2 Recombinant Finder for fasta sequences
ArtPoon/sealign
SeALign is an attempt to port Andrew Rambaut's Se-Al alignment editor to HTML5 Canvas and Javascript
ArtPoon/slides
ArtPoon/TreeShapeKernel
A kernel function for comparing the shapes of phylogenetic trees.