Pinned Repositories
datamonkey-js
Datamonkey - Run state-of-the-art statistical models through the comfort of your browser
flea-pipeline
A pipeline for long-read sequencing data.
hivtrace
hivtrace-viz
hyphy
HyPhy: Hypothesis testing using Phylogenies
hyphy-analyses
HyPhy standalone analyses
hyphy-tutorials
HyPhy tutorials
phylotree.js
Interactive viewer of phylogenetic trees
SARS-CoV-2
Daily analyses of genomic SARS-CoV-2 data
tn93
TN93 fast distance calculator
iGEM/UCSD evolutionary biology and bioinformatics group's Repositories
veg/hyphy
HyPhy: Hypothesis testing using Phylogenies
veg/phylotree.js
Interactive viewer of phylogenetic trees
veg/hyphy-analyses
HyPhy standalone analyses
veg/hivtrace
veg/tn93
TN93 fast distance calculator
veg/datamonkey-js
Datamonkey - Run state-of-the-art statistical models through the comfort of your browser
veg/hivtrace-viz
veg/alignment.js
Javascript alignment viewer
veg/ogv-dating
Scripts and results for estimating the dates of integrated HIV viruses using RNA samples from the same host
veg/hyphy-vision
Visualize HyPhy results in your browser
veg/datamonkey-js-server
veg/BioExt
A few handy bioinformatics tools not already within BioPython
veg/cawlign
veg/hivclustering
Infer molecular transmission networks from pairwise distance files (part of HIV-TRACE)
veg/pub-data
Publically available alignments (and trees) from published dN/dS analyses
veg/selection-tutorial
veg/LabSite
Website for the ACME Lab
veg/autotune-paper
veg/hivtrace-locales
Repository of hivtrace translations
veg/autotune-data
This repository contains datasets utilized in the AUTO-TUNE manuscript for inferring HIV transmission clusters based on genetic distances.
veg/biosampleMeta
Some biosample metadata scraping scripts for the ARGOS project
veg/cve-site
Website for CVE
veg/datamonkey-blog
veg/dwh
veg/Endothermy
veg/hyphy-python
veg/MSS-results
veg/multihit-app
veg/SARS-CoV-2-Dashboard
veg/veg.github.io
Veg pages