ArtPoon/gotoh2

Issues

• Failed to build on macOS Catalina

  #23 opened 3 years ago by ArtPoon
  0

• Failing simple alignment with gop=10 (default) but not with gop=8

  #22 opened 4 years ago by davidchampredon
  8

• Strange bit matrix behaviour with local alignment

  #16 opened 4 years ago by ArtPoon
  8

• Convert_fasta doesn't strip \r line terminators

  #21 opened 4 years ago by ewong347
  0

• Biopp2 matrix is missing

  #17 opened 4 years ago by ArtPoon
  0

• Problems installing on Langley (Ubuntu 16.04.6 LTS)

  #18 opened 4 years ago by ArtPoon
  3

• Changing gotoh directory name broke directory path

  #20 opened 4 years ago by ewong347
  1

• Calling align() causes crash

  #5 opened 7 years ago by ArtPoon
  5

• Unexpected behaviour around terminal gaps

  #14 opened 7 years ago by donkirkby
  14

• Aligner failed on an HIV RT sequence

  #15 opened 7 years ago by ArtPoon
  2

• ImportError under Python 3

  #10 opened 7 years ago by donkirkby
  3

• Missing file U54771.txt for unit test

  #13 opened 7 years ago by donkirkby
  2

• Can't load module from package root

  #4 opened 7 years ago by ArtPoon
  2

• Alignment sometimes fails when one sequence contains the other

  #12 opened 7 years ago by donkirkby
  2

• Benchmarking script fails with unused matrices

  #11 opened 7 years ago by ArtPoon
  1

• Missing NL4-3.txt file in unit tests

  #9 opened 7 years ago by donkirkby
  1

• Not working for sequences of about 100bp or more

  #6 opened 7 years ago by ArtPoon
  4

• Test failed, can't find HXB2-RT.txt

  #8 opened 7 years ago by donkirkby
  1

• Build failed: can't find Biopp.csv

  #7 opened 7 years ago by donkirkby
  0

• Implement local alignment

  #3 opened 7 years ago by ArtPoon
  1

• Refactor broke traceback

  #2 opened 7 years ago by ArtPoon
  6

• Wrong path calculation

  #1 opened 7 years ago by ArtPoon
  2