PoonLab/MiCall-Lite
Pipeline for processing FASTQ data from an Illumina MiSeq for human RNA virus (HIV, hepatitis C virus) genotyping
PythonAGPL-3.0
Issues
- 2
alignment of 10 million COVID19 genomes
#43 opened by Shicheng-Guo - 24
Validate MiCall on SARS-COV-2 Illumina data
#42 opened by ArtPoon - 0
- 1
User cannot specify custom JSON file
#39 opened by ArtPoon - 3
Deprecated function 'itertools.imap'
#37 opened by dfornika - 0
restore unit test suite
#28 opened by ArtPoon - 9
HIV drug resistance
#35 opened by Anastasiamiaomiao - 0
revise installation instructions
#36 opened by ArtPoon - 3
Error when --threads flag is used
#33 opened by dfornika - 0
generating counts is the slowest step
#34 opened by ArtPoon - 1
Clean up temp files
#31 opened by ArtPoon - 4
Provide Stanford HIVdb scoring workflow
#30 opened by ArtPoon - 18
- 0
Provide example files
#26 opened by ArtPoon - 0
Allow user to specify path to bowtie2
#8 opened by ArtPoon - 0
File read mode is deprecated
#27 opened by ArtPoon - 4
How to with multi-file batch processing
#29 opened by hihuhu - 3
Major problems installing MiCall-Lite on CentOS 7
#10 opened by ArtPoon - 3
- 4
Problems with usage
#20 opened by rng64 - 1
- 2
gotoh2 not found after installation
#21 opened by ArtPoon - 2
Bad magic number
#22 opened by ArtPoon - 1
Couldn't download JSON from HTML editor
#19 opened by ArtPoon - 1
Loading arbitrary local JSON file
#18 opened by ArtPoon - 1
Prevent remote access to Python http server
#17 opened by ArtPoon - 1
Keep all buttons along top row
#16 opened by ArtPoon - 0
- 1
Initial load of JSON file
#14 opened by ArtPoon - 2
Launching JSON editor
#11 opened by ArtPoon - 0
Display contents of JSON in web browser
#13 opened by ArtPoon - 1
JSON editing use cases
#12 opened by ArtPoon - 0
- 0
Unregistered loader type
#7 opened by ArtPoon - 0
Write INSTALL.md
#4 opened by ArtPoon - 5
- 0
- 0
Make most arguments optional
#3 opened by ArtPoon - 0
strip out cfe-specific code
#2 opened by ArtPoon - 1
replace gotoh with gotoh2
#1 opened by ArtPoon