attamatti
CryoEM, image processing, protein structure analysis, and more.
University of LeedsLive at Leeds
Pinned Repositories
bits
Bits and pieces of code useful for a lots of other things
crYOLO_helix_to_relion
convert cryolo helix picked particles to relion
EPU_foilhole_analysis
EPU_shot_tracking
ongoing development of tools to analyse EPU data collection runs
get_defocus_range
get the defocus range and distribution of the particles in a star file
movement_analysis
analysis of semi rigid body motions in multiple pdb files
orientation_equlization
Try to reduce the influence of overrepresented views
package_relion_project
package the files necessary to move a Relion project
star-edit
A simple program for modification of RELION star files
star_sample
Randomly sample micrographs starfile by defocus bins
attamatti's Repositories
attamatti/orientation_equlization
Try to reduce the influence of overrepresented views
attamatti/EPU_foilhole_analysis
attamatti/crYOLO_helix_to_relion
convert cryolo helix picked particles to relion
attamatti/EPU_shot_tracking
ongoing development of tools to analyse EPU data collection runs
attamatti/nanodisc_lipid_analysis
tools for looking at lipids in nanodisc simulations
attamatti/automated_model_gen_rln3p1
Generate fast initial models in relion3.1 from initial micrographs
attamatti/COM_analysis
Analyse relative positions of protein bodies
attamatti/fibril_segment_analysis
analyse crossover distances in populations of amyloid fibrils
attamatti/optimize_rln_PP_mask
optimise relion postprocessing mask by brute force.. use some common sense though! Nominal resolution isn't everything
attamatti/ABSL_OTF_GUI
GUI for ABSL OTF pipeline
attamatti/csparc_FSC_to_xml
Convert the FSC txt files from cryosparc in to xml for the emdb
attamatti/find_csparc-relion_parts
get the defocus info and relion image names to go from csparc back into relion
attamatti/rln_combine_stars
combine two Relion star files keeping only common columns
attamatti/rln_helical_analysis
Tools for analysing and troubleshooting helical reconstructions
attamatti/starfile_overlap
compare starfiles, extract particles that overlap with AND or NOT boolean
attamatti/unix_file_utilities
rename all the things!
attamatti/xice_finder
find crystalline ice in mrc images or particle stacks
attamatti/bits
Bits and pieces of code useful for a lots of other things
attamatti/movement_analysis
analysis of semi rigid body motions in multiple pdb files
attamatti/amyloid_particle_quality
Analyse amyloid fibril overlapping particles; filter by quality
attamatti/amyloid_subunit_angles
For Rodrigo
attamatti/asymmetric_dimer_finder
For Roberto
attamatti/EPU_duplicate_finder
FInd overlapping images in EPU data collections
attamatti/filematching
Match files to multiple templates
attamatti/indecisive_particles
find indecisive particles
attamatti/leeds_tomo_tools
tools for renaming and stacking tomography images
attamatti/merge_relion_projects
Combine relion projects using a joined starfile from different directories
attamatti/particle_defocus_analysis
examine the amount of information particles are contributing based on defocus
attamatti/rechain_pdb_for_schematic
attamatti/rln_find_renamed_particles
find particles once they have been renamed