Pinned Repositories
bametrics-nf
Nextflow pipeline to compute average metrics from reads that overlap a given set of positions
ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
data_test
Small data files to test IARC nextflow pipelines
git_test
IARC-nf
List of IARC bioinformatics nextflow pipelines
ImmuneResistance
This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".
PhD_Thesis
My PhD thesis content
Gviz_multiAlignments
R script for multiple BAM alignments viewing using Gviz (bioconductor package)
needlestack
Multi-sample somatic variant caller
PRSice-nf
Pipeline to compute polygenic risk scores
aurelieGabriel's Repositories
aurelieGabriel/bametrics-nf
Nextflow pipeline to compute average metrics from reads that overlap a given set of positions
aurelieGabriel/ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
aurelieGabriel/data_test
Small data files to test IARC nextflow pipelines
aurelieGabriel/git_test
aurelieGabriel/IARC-nf
List of IARC bioinformatics nextflow pipelines
aurelieGabriel/ImmuneResistance
This resource provides the code developed in the study of Jerby-Arnon _et al. "Single-cell RNA-seq of melanoma ecosystems reveals sources of T cell exclusion linked to immunotherapy clinical outcomes".
aurelieGabriel/PhD_Thesis
My PhD thesis content
aurelieGabriel/Imputation-nf
Imputation pipeline
aurelieGabriel/imputed_snps_extraction-nf
aurelieGabriel/needlestack
Multi-sample somatic variant caller
aurelieGabriel/projetBoids
aurelieGabriel/signac
R toolkit for the analysis of single-cell chromatin data
aurelieGabriel/SuperCell
Coarse-graining of large single-cell RNA-seq data into super-cells
aurelieGabriel/thesis-template
LaTeX template for PhD thesis
aurelieGabriel/tpPpm
aurelieGabriel/tpString