/SurfR_Cholangio

R code for SurfR Bioconductor package cholangiocarcinoma use case

MIT LicenseMIT

alt text

SurfR applications

Cancer: cholangiocarcinoma

SurfR Bioconductor package use-case R code.

Bulk RNA-Seq re-analysis of:

  • GSE107943 dataset
  • TCGA.CHOL dataset

References

Ahn KS, Kang KJ, Kim YH, Kim TS et al. Genetic features associated with (18)F-FDG uptake in intrahepatic cholangiocarcinoma. Ann Surg Treat Res 2019 Apr;96(4):153-161

The Cancer Genome Atlas Research Network., Weinstein, J., Collisson, E. et al. The Cancer Genome Atlas Pan-Cancer analysis project. Nat Genet , 2013, 45:1113–1120.