EasyAmplicon
An easy using, open-resource, reproducible, and community-based pipeline for amplicon data analysis in microbiome
What can we do?
- Analysis and visualization of microbiome data, especially for 16S rDNA amplicon;
- From raw data into feature tables;
- Support 20+ analysis methods and publish-read visualization;
- Finish your project at your laptop in 3 hours;
- Chinese manual and video supported.
Figure 1. Pipeline of EasyAmplicon for analysis pair-end amplicon data.
**Figure 2. Examples of visualizations. **
Install
Pipeline Manual
Using RStudio open the pipeline.sh.
Files description:
- Readme.md # Introduction and install
- pipeline.sh # Command-line analysis
- tutorial.Rmd # Interactive analysis in R and output reproducible report in HTML format