auton1

Pinned Repositories

Bherer_etal_SexualDimorphismRecombination
Recombination maps from Bhérer, C. et al. Nature Communications
Language:R0 2 01
Campbell_et_al
Recombination maps from Campbell et al., Nat Comms, 2015
3 2 12
dog_recomb
Data associated with Auton et al., PLOS Genetics, 2013
2 2 02
interference
MATLAB code for estimating crossover interference under the Housworth-Stahl model.
Language:MATLAB4 2 01
LDhat
Estimate recombination rates from population genetic data
Language:C58 9 2821
LDhot
Detect recombination hotspots using population genetic data.
Language:C++15 2 36
long_range_LD
Find Long Range LD using TAPER algorithm
Language:C++1 2 02
motiflocation
Small program to find motif locations in FASTA files.
Language:C++4 2 00
rMCMC
Recombination MCMC
Language:C++2 3 03
viterbi
Find shared haplotypes between individuals.
Language:C++4 2 13

auton1's Repositories

auton1/LDhat
Estimate recombination rates from population genetic data
Language:C58 9 2821
auton1/LDhot
Detect recombination hotspots using population genetic data.
Language:C++15 2 36
auton1/interference
MATLAB code for estimating crossover interference under the Housworth-Stahl model.
Language:MATLAB4 2 01
auton1/motiflocation
Small program to find motif locations in FASTA files.
Language:C++4 2 00
auton1/viterbi
Find shared haplotypes between individuals.
Language:C++4 2 13
auton1/Campbell_et_al
Recombination maps from Campbell et al., Nat Comms, 2015
3 2 12
auton1/dog_recomb
Data associated with Auton et al., PLOS Genetics, 2013
2 2 02
auton1/rMCMC
Recombination MCMC
Language:C++2 3 03
auton1/long_range_LD
Find Long Range LD using TAPER algorithm
Language:C++1 2 02
auton1/Bherer_etal_SexualDimorphismRecombination
Recombination maps from Bhérer, C. et al. Nature Communications
Language:R0 2 01
auton1/LocusZoom
Create regional association plots from GWAS or meta-analysis
Language:Python1
auton1/simple_python_cpp_example
Super simple example of calling C++ from Python.
Language:C++1