Pinned Repositories
ADASTRA-pipeline
ArmNet
BABACHI
human_legnet
LegNet
accurate prediction of promoter activity and variant effects from massive parallel reporter assays
macro-perfectos-ape
MACRO-APE and PERFECTOS-APE tools
MixALime
motif_benchmarking_data
Motif benchmarking supplementary data for paper submission
motif_benchmarks
Benchmarks collection for GRECO TFBS Benchmarking Initiative
vigg_ribonanza
Source code of the Stanford Ribonanza RNA Folding first place solution
autosome-ru's Repositories
autosome-ru/LegNet
accurate prediction of promoter activity and variant effects from massive parallel reporter assays
autosome-ru/vigg_ribonanza
Source code of the Stanford Ribonanza RNA Folding first place solution
autosome-ru/MixALime
autosome-ru/human_legnet
autosome-ru/ADASTRA-pipeline
autosome-ru/ArmNet
autosome-ru/BABACHI
autosome-ru/motif_benchmarks
Benchmarks collection for GRECO TFBS Benchmarking Initiative
autosome-ru/macro-perfectos-ape
MACRO-APE and PERFECTOS-APE tools
autosome-ru/sarus
SPRY-SARUS motif scanner
autosome-ru/ibis-challenge
Repository with source code and metadata for IBIS challenge
autosome-ru/papolarity
Tools to deal with coverage profile on a transcript level. Allows to analyse ribosome positional preferences (such as polarity score) based on Ribo-Seq data.
autosome-ru/pasio
Pasio is a tool for denoising profiles coming from DNA-sequencing data like ATAC-seq, DNA-seq or ChIP-seq.
autosome-ru/sequence_logo
SequenceLogo is a tool for drawing sequence logos of motifs
autosome-ru/hocomoco_webapp
Web-site for HOCOMOCO collection of transcription factor binding sites motifs.
autosome-ru/mixalime_reproduction_material
Reproduction material for numerical tests in a MixALime paper
autosome-ru/NeMARA
NeMARA
autosome-ru/ASB-backend
autosome-ru/ASB-frontend
autosome-ru/draw_motif_logo
Python3 scripts to draw motif logo in svg format
autosome-ru/epifactors_webapp
Web-site for EpiFactors database of epigenetic factors, corresponding genes and products.
autosome-ru/hocomoco_rsnp_benchmarks
autosome-ru/hocomoco_v9
Old version of HOCOMOCO TFBS motif database, version 9: https://autosome.ru/HOCOMOCO
autosome-ru/HT-SELEX-kmer-filtering
K-mer filtering algorithm for HT-SELEX data processing
autosome-ru/kmer-motif-enrichment
autosome-ru/MoLoTool
Sequence Motif Location Tool (MoLoTool)
autosome-ru/opera_webface
Webface for OperaHouse (included inside)
autosome-ru/PBM_preprocessing
autosome-ru/PWM-evaluation-using-SNP-SELEX
Supplementary data for "Positional weight matrices have sufficient prediction power for analysis of noncoding variants"
autosome-ru/UDACHA_pipeline