Pinned Repositories
2015-02-09-ucdavis
UC Davis Data Carpentry workshop
aps_workshop
avalonmmiller.github.io
awesome-R
A curated list of awesome R packages, frameworks and software.
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
biotools
A list of useful bioinformatics resources
cheatsheets
Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.
CS6823_FunML
customized_upset_plots
Make customized upset plots: from raw data to plots
data-visualisation-course
interactive data visualisation
avalonmmiller's Repositories
avalonmmiller/aps_workshop
avalonmmiller/avalonmmiller.github.io
avalonmmiller/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
avalonmmiller/cheatsheets
Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.
avalonmmiller/CS6823_FunML
avalonmmiller/customized_upset_plots
Make customized upset plots: from raw data to plots
avalonmmiller/data-visualisation-course
interactive data visualisation
avalonmmiller/deeplearning-biology
A list of deep learning implementations in biology
avalonmmiller/EffectorP-2.0
Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0
avalonmmiller/FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
avalonmmiller/ggpathway
A tutorial for pathway visualization using tidyverse, igraph, and ggraph
avalonmmiller/image-processing
Image Processing with Python
avalonmmiller/MetaboAnalystR
R package for MetaboAnalyst
avalonmmiller/metabolomic_selection_for_enhanced_fruit_flavor
Repository for Colantonio et al., 2022, "Metabolomic Selection for Enhanced Fruit Flavor"
avalonmmiller/NLR-Annotator
NLR-Annotator upload
avalonmmiller/Online_R_learning
Online R learning for applied statistics
avalonmmiller/OrthoFinder
Phylogenetic orthology inference for comparative genomics
avalonmmiller/orthologr
Genome wide orthology inference and dNdS estimation
avalonmmiller/Python-Guides
This repository contains the codes for the Python tutorials on statology.org
avalonmmiller/python-machine-learning-book
The "Python Machine Learning (1st edition)" book code repository and info resource
avalonmmiller/PythonDataScienceHandbook
Python Data Science Handbook: full text in Jupyter Notebooks
avalonmmiller/R-Guides
This repository contains the codes for the R tutorials on statology.org
avalonmmiller/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
avalonmmiller/scRNAseq-analysis-notes
scRNAseq analysis notes from Ming Tang
avalonmmiller/Supervised-Learning
avalonmmiller/Training-modules
Materials for short, half-day workshops
avalonmmiller/transrate
Understand your transcriptome assembly
avalonmmiller/treedata-book
:books: a complete reference book for treeio, tidytree and ggtree packages
avalonmmiller/Unsupervised-Learning
avalonmmiller/waves
R package for Vis-NIR spectral analysis