Pinned Repositories
assembleBAC
assembleBAC-ONT
This pipeline assembles ONT sequence data
augur
Pipeline components for real-time virus analysis
bacQC
bacQC-ONT
QC pipeline for ONT data
bactmap
WIP: A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
bovisanalyzer
nextflow pipeline for analyzing Mycobacterium bovis genomes
Ghana_course
itol_generator
seqSerotyper
seqSerotyper is a tool for assigning serotypes to pneumococcal whole genome sequences
avantonder's Repositories
avantonder/bovisanalyzer
nextflow pipeline for analyzing Mycobacterium bovis genomes
avantonder/assembleBAC-ONT
This pipeline assembles ONT sequence data
avantonder/seqSerotyper
seqSerotyper is a tool for assigning serotypes to pneumococcal whole genome sequences
avantonder/bacQC
avantonder/itol_generator
avantonder/Ghana_course
avantonder/assembleBAC
avantonder/augur
Pipeline components for real-time virus analysis
avantonder/bacQC-ONT
QC pipeline for ONT data
avantonder/bactmap
WIP: A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
avantonder/Brazil2020
avantonder/docker_images
avantonder/Ethiopia2020
avantonder/andriesvantonder.github.io
Code for my website
avantonder/genomeQCeR
avantonder/mapBAC
avantonder/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
avantonder/multi-package-containers
Testing building mulled containers for multi-requirement tools.
avantonder/RBCT
avantonder/run_kraken
avantonder/runBakta
nextflow pipeline for running bakta on assemblies
avantonder/test-datasets
Test data to be used for automated testing with the nf-core pipelines