avdanurag

avdanurag's Stars

• ohdongha/OrthNet

  CLfinder-OrthNet, a pipeline to encode orthologs from multiple genomes and their evolutionary history into networks (OrthNets) based on co-linearity between them. OrthNets enable detection of all orthologous gene groups that share the same evolutionary history, using a search based on network topology

  Language:Python93

• Rinoahu/SwiftOrtho

  A high performance tool to identify orthologs and paralogs across genomes.

  Language:Python2711

• MycoPunk/Afum_PopPan

  A. fum.pop/pan/phylo genomics

  Language:R61

• jtlovell/GENESPACE

  Language:R19427

• PlantDr430/FunFinder_Pangenome

  Data analysis of Funannotate and Orthofinder outputs to Pangenome results

  Language:Python185

• pangenome/pggb

  the pangenome graph builder

  Language:Shell40544

• GoekeLab/awesome-nanopore

  A curated list of awesome nanopore analysis tools.

  24446

• lh3/minigraph

  Sequence-to-graph mapper and graph generator

  Language:C42638

• wen-biao/OM-HiC-scaffolding

  Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data

  Language:Perl215

• wen-biao/toolbox

  1

• schneebergerlab/AMPRIL-genomes

  scripts for the project of seven thaliana genomes assembly

  Language:Python3818

• wen-biao/AMPRIL-genomes

  scripts for the project of seven thaliana genomes assembly

  21

• kingralph80/g2gtools

  Personal diploid genome creation and coordinate conversion

  1

• zd1/telseq

  A software for calculating telomere length

  Language:C++6726

• mmatschiner/tutorials

  Tutorials on phylogenetic and phylogenomic inference

  Language:HTML368171

• jluebeck/FaNDOM

  Fast Nested Distance aligner for Optical Maps

  Language:Python31

• OpenMendel/VCFTools.jl

  Julia utilities for handling VCF files

  Language:Julia184

• Nextomics/NextPolish2

  Repeat-aware polishing genomes assembled using HiFi long reads

  Language:Rust763

• mdozmorov/HiC_tools

  A collection of tools for Hi-C data analysis

  555125

• harvardinformatics/nanopore-assembly

  2

• gosling-lang/gos

  A declarative interactive genomics visualization library for Python.

  Language:Python21914

• jcerca/unix_oneliners

  Scripts and one-liners to do data formatting and simple tasks required by fellow biologists.

  11

• OpenMendel/MendelImpute.jl

  OpenMendel package for haplotyping and imputation

  Language:Julia251

• Donders-Institute/hpc-wiki-v2

  The HPC wiki written in reStructuredText and hosted on ReadTheDocs

  Language:Python612

• brettChapman/paf2pav

  Language:Python9

• schae234/PonyTools

  Tools for the MNEc Affy SNP Chip

  Language:Python22

• jdetras/SNP-Calling

  Language:Nextflow4

• AdmiralenOla/Scoary

  Pan-genome wide association studies

  Language:Python16635

• bcgsc/pavfinder

  :mag: Post Assembly Variants Finder

  Language:Python175

• OpenMendel/OrdinalGWAS.jl

  Genome-wide association studies (GWAS) for ordered categorical phenotypes

  Language:Julia217