avdanurag

avdanurag's Stars

• xdanaux/moderncv

  A modern curriculum vitae class for LaTeX

  Language:TeX1.8k4675566

• lynnlangit/gcp-for-bioinformatics

  GCP for Bioinformatics Researchers

  Language:Jupyter Notebook24216270

• dfguan/purge_dups

  haplotypic duplication identification tool

  Language:C217914923

• VGP/vgp-assembly

  VGP repository for the genome assembly working group

  Language:Shell188262351

• hillerlab/TOGA

  TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annotation, inferring orthologs and classifying genes as intact or lost.

  Language:Python165916722

• hewm2008/NGenomeSyn

  Any Way to Show Multi genomic Synteny

  Language:Perl16331417

• BGI-shenzhen/LDBlockShow

  LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

  Language:Perl14554541

• almiheenko/AGB

  Interactive visualization of assembly graphs

  Language:JavaScript807127

• liangclab/HERA

  Language:Perl7632022

• Kuanhao-Chao/LiftOn

  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies

  Language:Python692293

• JiaoLaboratory/CRAQ

  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement

  Language:Perl564255

• bpucker/teaching

  This repository gives an overview of my teaching activities. Links to slides and data sets are included. Feel free to re-use my content.

  485010

• bpucker/PythonTUBS

  Python introduction for life scientists

  Language:Python45208

• dfguan/asset

  assembly evaluation tool

  Language:C34496

• cfarkas/annotate_my_genomes

  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes

  Language:Nextflow30233

• tpook92/HaploBlocker

  R-package: Calculation of haplotype blocks and libraries

  Language:R302132

• simon19891216/GFAP

  a software for annotating plant genes

  Language:TypeScript20344

• FadyMohareb/mapoptics

  MapOptics is a lightweight cross-platform tool that enables the user to visualise and interact with the alignment of Bionano optical mapping data and can be used for in depth exploration of hybrid scaffolding alignments.

  Language:Java17225

• WarrenLab/chicken-pangenome-paper

  Scripts used to perform analyses in Rice et al. (2023)

  Language:Jupyter Notebook15322

• AliTVTeam/AliTV-perl-interface

  Language:Perl103583

• belowlab/IMMerge

  Tool to merge VCF genotype files at scale

  Language:Python9166

• malachycampbell/StatisticalMethodsforOmicsAssistedBreeding

  Slides for short course on 'omics assisted breeding methods

  Language:HTML9107

• mighster/R_Genomic_Prediction_Scripts

  Language:R8104

• DPCscience/Genomic-Selection-tutorial

  Language:R6203

• uab-cgds-worthey/quac

  🦆 Quality Control of WGS and exome samples 🦆

  Language:Python63731

• RILAB/historical_genomics

  maize historical genomics

  Language:R5804

• QZH2022/germline_flow

  Language:Shell2101

• DPCscience/Genomic-Selection

  Language:R1100

• jlboat/CP-NAM

  Scripts used to process the Sorghum Carbon-Partitioning NAM

  Language:Shell1201

• thackl/NCBI-Taxonomy

  Language:Perl120