liangclab/HERA

Issues

• bwa mem invalid option in HERA pipeline

  #19 opened 4 years ago by shiyi-pan
  1

• SplitRef.pl not found

  #20 opened 4 years ago by shiyi-pan
  0

• Input Question

  #18 opened 5 years ago by cassondranewman
  0

• how to generate the overlap.txt file

  #17 opened 5 years ago by eXps-coder
  1

• about mapping software bwa!

  #7 opened 5 years ago by sunnycqcn
  6

• Use HERA without bionano

  #5 opened 5 years ago by Axolotl233
  16

• Use of uninitialized value

  #9 opened 5 years ago by chopra29
  7

• overlap.txt file

  #16 opened 5 years ago by eXps-coder
  0

• Inputs of HERA

  #15 opened 5 years ago by SixPlusSeven
  1

• No SuperContig.fasta!

  #13 opened 5 years ago by sunnycqcn
  5

• Whether HERA supports nanopore reads?

  #14 opened 5 years ago by asdcid
  1

• Using HERA whithout being part of the LSF community

  #11 opened 5 years ago by lalalagartija
  1

• What are some of the pipeline.sh parameters?

  #12 opened 5 years ago by doivosevic
  0

• Workaround for HPC infrastructure

  #2 opened 5 years ago by Neato-Nick
  2

• Problems trying to get the script running on test ecoli data locally

  #10 opened 5 years ago by doivosevic
  0

• about 03-fasta-splitter.pl!

  #4 opened 5 years ago by sunnycqcn
  5

• 05-Filtered_InterIncluded_Pacbio

  #6 opened 5 years ago by sunnycqcn
  2

• work with nanopore data

  #3 opened 5 years ago by yilunhuangyue
  2

• InterIncluded_Pacbio.txt and PacbioAlignmentFiltered.txt - File size zero

  #8 opened 5 years ago by chopra29
  3

• Handling multiple smrt cells

  #1 opened 5 years ago by Neato-Nick
  1