pollen3d

pollen3d is a software for 3D reconstruction from images coming from Scanning Electron Microscope. It is available for Windows, MacOS, and Linux.

Overview

Install

install cmake
check that cmake is installed by running cmake --version in terminal (or cmd.exe) the output should be similar to cmake version 3.13.4
install conan (c++ software apckage manager)
check that conan is installed by running conan --version in terminal (or cmd.exe) the output should be similar to Conan version 1.23.0
run the following commands in the terminal of your choice

git clone --recursive https://github.com/avkudr/pollen3d
cd pollen3d

# install dependencies if needed
mkdir 3rdparty_release
cd 3rdparty_release
conan remote add bincrafters "https://api.bintray.com/conan/bincrafters/public-conan"
conan remote add camposs "https://conan.campar.in.tum.de/api/conan/conan-camposs"
#unix
conan install .. -s build_type=Release --build=missing -s compiler.libcxx=libstdc++11
#windows
conan install .. -s build_type=Release --build=missing -s compiler.cppstd=14 -s compiler.version=15
cd ..

mkdir build && cd build
cmake .. -DCMAKE_BUILD_TYPE=Release
cmake --build . --config Release
./app/bin/pollen3d

References

If you use pollen3d in your research activities, please cite this paper

@phdthesis{kudryavtsev20173d,
  title={3D Reconstruction in Scanning Electron Microscope: from image acquisition to dense point cloud},
  author={Kudryavtsev, Andrey},
  year={2017},
  school={University of Bourgogne Franche-Comt{\'e}}
}