avsastry

Researcher at @SBRG interested in machine learning of omics datasets

@SBRG San Diego, CA

Pinned Repositories

adjustText
A small library for automatically adjusting text position in matplotlib plots to minimize overlaps.
Language:Python0 1 00
cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
Language:Python0 0 00
MASS-Toolbox
Mass Action Stoichiometric Simulation (MASS) Toolbox
Language:Mathematica0 1 00
modulome-workflow
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
Language:HTML15 2 1323
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:Python0 0 00
MASS-Toolbox
Mass Action Stoichiometric Simulation (MASS) Toolbox
Language:Mathematica11 13 408
precise-db
A high-fidelity E. coli RNA-seq compendium
Language:Jupyter Notebook32 8 1019
Protein_ML
Machine learning workflows for analyzing high-throughput protein data
24 9 011
pymodulon
Python package for analyzing and visualizing iModulons
Language:Python12 7 4814
xplatform_ica_paper
Data and code for "Matrix factorization recovers consistent regulatory signals from disparate datasets"
Language:Jupyter Notebook0 4 00

avsastry/modulome-workflow
Workflow to download, process, and explore microbial RNA-seq data from NCBI SRA
Language:HTML15 2 1323
avsastry/adjustText
A small library for automatically adjusting text position in matplotlib plots to minimize overlaps.
Language:Python0 1 00
avsastry/cobrapy
COBRApy is a package for constraint-based modeling of metabolic networks.
Language:Python0 0 00
avsastry/MASS-Toolbox
Mass Action Stoichiometric Simulation (MASS) Toolbox
Language:Mathematica0 1 00
avsastry/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
Language:Python0 0 00
avsastry/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
Language:HTML0 0
avsastry/pymodulon
Python package for analyzing and visualizing iModulons
Language:Python0 0
avsastry/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Language:Python0 0
avsastry/U01_ICA_tutorial
Tutorial on ICA for the U01 modeling working group
Language:Jupyter Notebook1 0