Semantic Segmentation of Microfossils in Carbonatic Rocks

Notebook for the semantic segmentation of microfossil samples in MicroCT-acquired bore cores from carbonatic rocks. This notebook assumes that you are either using Google Colab or that you have the latest versions of PyTorch and fast.ai installed. You'll also need a GPU with at least 11 GB RAM.

Institutional version@UFSC of this Git: https://codigos.ufsc.br/lapix/Segmentation-of-Microfossils-in-Carbonatic-Rocks

The dataset for this code can be found here: http://www.lapix.ufsc.br/microfossil-segmentation

Acknowledgments

This study was financed in part by the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior - Brasil (CAPES) - Finance Code 001 and by PETROBRAS through the research project number 902. There are no conflicts of interest.

Citing this Git

@misc{MicrofossilSegmentation2019,
  author = {Carvalho, L.E. and von Wangenheim, A.},
  title = {Semantic Segmentation of Microfossils in Carbonatic Rocks},
  year = {2019},
  publisher = {GitHub},
  journal = {GitHub repository},
  howpublished = {\url{https://github.com/awangenh/Segmentation-of-Microfossils-in-Carbonatic-Rocks}}
}