Pinned Repositories
190531-SQL
2017
Materials used during #NGSchool2017
2017-06-13-SGUL-SciPro
2017-06-13-SGUL-SciPro-Linux
2017-06-13-SGUL-SciPro-Python
2017-06-13-SGUL-SciPro-R
bioperl-live
Core BioPerl 1.x code
bioperl-run
BioPerl wrappers
MicrobeDB
Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI
awitney's Repositories
awitney/bioperl-live
Core BioPerl 1.x code
awitney/bioperl-run
BioPerl wrappers
awitney/MicrobeDB
Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI
awitney/190531-SQL
awitney/2017
Materials used during #NGSchool2017
awitney/2017-06-13-SGUL-SciPro
awitney/2017-06-13-SGUL-SciPro-Linux
awitney/2017-06-13-SGUL-SciPro-Python
awitney/2017-06-13-SGUL-SciPro-R
awitney/awitney.github.io
awitney/BDiB_2021_DNA_Seq_Motifs
awitney/docker-images
awitney/dotfiles
awitney/hAMRonization
Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure
awitney/hAMRonization_workflow
Harmonization of AMR predictor tool outputs
awitney/kasel
awitney/MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
awitney/NGS-bioinformatics-workshop_SGUL_31-01-2020
Repository of the NGS Bioinformatics workshop at St George's University of London
awitney/pathogen-informatics-training
awitney/poretools
a toolkit for working with Oxford nanopore data
awitney/pyjar
A python implementation of the joint ancestral state reconstruction algorithm of Pupko et al
awitney/r_for_beginners_2022_04_29
awitney/reticulatus
A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
awitney/UKRSE.github.io
Website for the UK Society of Research Software Engineers