Pinned Repositories
autowrap
Generates Python Extension modules from Cythons PXD files
bioconda-recipes
Conda recipes for the bioconda channel.
build-scripts
Holds the scripts for setting up basic platform specific (but machine independent) environments to build OpenMS for different purposes.
ion-chromatogram-extractor
Extract ion chromatograms from a mzML file and store retention time and intensity values.
OpenMS
The codebase of the OpenMS project
pymetabo
pyopenms-workshop
pyOpenMS workshop Metabolomics Pre-Processing
streamlit-metabolomics-statistics
targeted-swath-gui
Targeted metabolomics project using OpenSwathWorkflow.
umetaflow-gui
Graphical user interface for the UmetaFlow pipepline for the analysis of metabolomics LC-MS data.
axelwalter's Repositories
axelwalter/pyopenms-workshop
pyOpenMS workshop Metabolomics Pre-Processing
axelwalter/umetaflow-gui
Graphical user interface for the UmetaFlow pipepline for the analysis of metabolomics LC-MS data.
axelwalter/pymetabo
axelwalter/streamlit-metabolomics-statistics
axelwalter/ion-chromatogram-extractor
Extract ion chromatograms from a mzML file and store retention time and intensity values.
axelwalter/OpenMS
The codebase of the OpenMS project
axelwalter/targeted-swath-gui
Targeted metabolomics project using OpenSwathWorkflow.
axelwalter/autowrap
Generates Python Extension modules from Cythons PXD files
axelwalter/bioconda-recipes
Conda recipes for the bioconda channel.
axelwalter/build-scripts
Holds the scripts for setting up basic platform specific (but machine independent) environments to build OpenMS for different purposes.
axelwalter/diametalyzer
DIAMetAlyzer nextflow
axelwalter/diametalyzer-app
The OpenMS DIAMetAlyzer metabolomics workflow as web application.
axelwalter/FBMN-STATS
A hitchhiker's guide to statistical analysis of non-targeted LC-MS/MS data:
axelwalter/homepage
This repository contains the homepage of the KohlbacherLab.
axelwalter/MassCalculator
axelwalter/metaboigniter
Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
axelwalter/metabolite-quantifier
axelwalter/openms-panel-template
axelwalter/openms-streamlit
Streamlit deployment with Traefik and Docker
axelwalter/OpenMS-website
axelwalter/pyopenms-docs
pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.
axelwalter/pyOpenMS_UmetaFlow
Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python)
axelwalter/pyopenms_viz
Streamlining Mass Spectrometry Data Visualization with Pandas
axelwalter/snakemake_UmetaFlow
Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
axelwalter/streamlit-deployment
Streamlit deployment with Docker
axelwalter/streamlit-template
axelwalter/targeted-feature-extraction
axelwalter/THIRDPARTY
External binary dependencies (e.g. search engine binaries) packaged in installers