ay-lab/dcHiC

Issue with pandoc

Closed this issue · 4 comments

Hi,

Thanks for developing dcHiC.
I encountered an issue with pandoc. The error information was at below:

Error in pandoc_self_contained_html(file, file) :
Saving a widget with selfcontained = TRUE requires pandoc. See here to learn more https://bookdown.org/yihui/rmarkdown-cookbook/install-pandoc.html
Calls: subcompartment ... -> -> pandoc_self_contained_html
In addition: There were 50 or more warnings (use warnings() to see the first 50)
Execution halted

Could you please help me check it?

sessionInfo()
R version 4.2.3 (2023-03-15)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS Big Sur ... 10.16

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached):
[1] compiler_4.2.3

This is something new! Can you run without the pandoc?

This is something new! Can you run without the pandoc?

Thanks for your response. I have resolved it out. It cannot be run through without pandoc. But the pandoc should be installed using brew install pandoc.

Great to know that! Thanks.