ay-lab/dcHiC

Issues

• error: Two levels of parallelism are used. See `?assert_cores`.

  #50 opened 2 years ago
  5

• hashmap

  #49 opened 2 years ago
  3

• Normalized counts or raw counts?

  #48 opened 2 years ago
  2

• error in hclust (--pcatype select)

  #47 opened 2 years ago
  4

• Support for other genomes:

  #46 opened 2 years ago
  2

• Make some files more unix-friendly

  #45 opened 2 years ago
  3

• Questions regarding running dcHiC

  #41 opened 2 years ago
  7

• Unknown genome id while open the html file

  #40 opened 2 years ago
  1

• "Fithic requires a bias file." in "--pcatype fithic" step

  #39 opened 2 years ago
  4

• error in pcselect step

  #38 opened 2 years ago
  4

• Modality cis issues and target folder definition

  #37 opened 2 years ago
  1

• How to run dcHiC without replicates

  #36 opened 2 years ago
  8

• Error in subcompartment analysis

  #35 opened 3 years ago
  9

• Correct the A/B compartment

  #34 opened 3 years ago
  3

• run err

  #33 opened 3 years ago
  10

• Error when running --pcatype analyze

  #32 opened 3 years ago
  1

• PC1 of one chr is chromosome arm

  #31 opened 3 years ago
  3

• FitHiC index error - ExpCC not calculated

  #30 opened 3 years ago
  7

• error while running dcHiC

  #29 opened 3 years ago
  2

• Error in checkForRemoteErrors when performing PCA on cis interaction matrix

  #28 opened 3 years ago
  1

• dcHiC without replicates

  #27 opened 3 years ago
  4

• Pre-processing data for input

  #26 opened 3 years ago
  8

• functionsdchic.cpp:12:10: fatal error: BMAcc.h: No such file or directory

  #25 opened 3 years ago
  7

• % variance explained by PC1

  #24 opened 3 years ago
  3

• General questions about changes in 3D organization of chromatin

  #23 opened 3 years ago
  2

• How to escape the problem due to Qt platform?

  #22 opened 3 years ago
  2

• FileNotFoundError for chr1 but not others

  #21 opened 3 years ago
  2

• File for -repParams missing chr Y

  #20 opened 4 years ago
  2

• B-to-A switch generated by dcHiC cannot be validated by HiCExplorer and HOMER

  #19 opened 3 years ago
  0

• Add covariates to the model

  #18 opened 3 years ago
  2

• Differential calling error

  #17 opened 4 years ago
  1

• a general question

  #16 opened 4 years ago
  0

• Question about multiple comparison method

  #15 opened 4 years ago
  1

• Summary error

  #14 opened 4 years ago
  5

• Error when using the latest version of dcHiC

  #13 opened 4 years ago
  3

• questions about the chr substring in chromosome

  #12 opened 4 years ago
  2

• How to deal with technical duplication

  #11 opened 4 years ago
  1

• Support for other genomes.

  #10 opened 4 years ago
  2

• KeyError with gofilter.py: Issue with .bed file?

  #9 opened 4 years ago
  2

• Typo

  #8 opened 4 years ago
  1

• How to generate "-repParams" file

  #7 opened 4 years ago
  2

• how to define signicantly differential compartment switch

  #6 opened 4 years ago
  1

• How to locate the highly different compartment

  #5 opened 4 years ago
  6

• plot error

  #4 opened 4 years ago
  1

• Error during running dcHiC

  #3 opened 4 years ago
  4

• Some questions about Pre Processing Correlation Matrices

  #2 opened 4 years ago
  4

• dcHiC result

  #1 opened 4 years ago
  13