Pinned Repositories
academic-kickstart
academic-kickstart-1
📝 Easily create a beautiful website using Academic, Hugo, and Netlify
ayeaton.github.io
Baysor
Bayesian Segmentation of Spatial Transcriptomics Data
BMSC-GA-4493-Spring2018
BMSC-GA 4493 Deep Learning in Medicine
DL_hyperparameter
HHOT
scooterRMD
scRNAscripts
My scripts for the initial steps of scRNAseq/CITEseq analysis. A lot of code is from Igor Dolgalev (https://github.com/igordot/genomics), Teo Sakel* (https://github.com/TeoSakel) and Seurat (https://github.com/satijalab/seurat)
scooter
single-cell RNA-seq analysis pipeline
ayeaton's Repositories
ayeaton/HHOT
ayeaton/scRNAscripts
My scripts for the initial steps of scRNAseq/CITEseq analysis. A lot of code is from Igor Dolgalev (https://github.com/igordot/genomics), Teo Sakel* (https://github.com/TeoSakel) and Seurat (https://github.com/satijalab/seurat)
ayeaton/BMSC-GA-4493-Spring2018
BMSC-GA 4493 Deep Learning in Medicine
ayeaton/DL_hyperparameter
ayeaton/scooterRMD
ayeaton/academic-kickstart
ayeaton/academic-kickstart-1
📝 Easily create a beautiful website using Academic, Hugo, and Netlify
ayeaton/ayeaton.github.io
ayeaton/Baysor
Bayesian Segmentation of Spatial Transcriptomics Data
ayeaton/bedtools
A powerful toolset for genome arithmetic.
ayeaton/chromVAR
chromatin Variability Across Regions (of the genome!)
ayeaton/cs230-code-examples
Code examples in pyTorch and Tensorflow for CS230
ayeaton/DeepPATH
Classification of Lung cancer slide images using deep-learning
ayeaton/hdf5_to_cellprofiler
parallelized method to calculate features using cellprofiler from H&E tiles that are stored in hdf5 format
ayeaton/HistoPathNCA_pipeline
A nuclear and cell annotation pipeline from histopathology H&E slides using CellProfiler.
ayeaton/InnerEye-DeepLearning
Medical Imaging Deep Learning library to train and deploy models on Azure Machine Learning and Azure Stack
ayeaton/jupyter_vitessce_tmp
ayeaton/NanoString_coregistration
ayeaton/old_web_attempt
:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
ayeaton/otdd
Optimal Transport Dataset Distance
ayeaton/pytorch-Deep-Learning-Minicourse
Minicourse in Deep Learning with PyTorch
ayeaton/Rotation3
ayeaton/scATAC-cicero-seurat
ayeaton/signed-ks-test
A modified R ks.test to obtain sign and force exact p-value.
ayeaton/slurm-gcp
Slurm on Google Cloud Platform
ayeaton/taxumap
ayeaton/test_merfish_docker
ayeaton/tiles_to_hdf5
Take images and save as hdf5s