aylwyn

aylwyn's Stars

• mcnees/LaTeX-Graph-Paper

  Make your own quadrille, graph, hex, etc paper! Uses the pgf/TikZ package for LaTeX, which should be part of any modern TeX installation.

  Language:TeX45646

• hovancik/stretchly

  The break time reminder app

  Language:JavaScript4.5k440

• popgenmethods/lecture_notes

  Lecture Notes on Computational and Mathematical Population Genetics

  18415

• kharchenkolab/vrnmf

  Volume-regularized NMF

  Language:R174

• OpenBoard-org/OpenBoard

  OpenBoard is a cross-platform interactive whiteboard application intended for use in a classroom setting.

  Language:C++2.3k426

• CshlSiepelLab/argweaver

  Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)

  Language:C++133

• DReichLab/EIG

  Eigen tools by Nick Patterson and Alkes Price lab

  Language:C18059

• plangrid/pdf-annotate

  Pure-python library for adding annotations to PDFs

  Language:Python19345

• GNOME/dasher

  Read-only mirror of https://gitlab.gnome.org/GNOME/dasher

  Language:C5958

• emkoch/wolf-dnm-pipeline

  Bioinformatics pipeline for the identification of putative de novo mutation in a wolf pedigree

  Language:Python2

• cs224/pybnl

  python interface to bnlearn and other probabilistic graphical model libraries

  Language:Python94

• popgenmethods/momi2

  Infer demographic history with the Moran model

  Language:Python4711

• jeetsukumaran/DendroPy

  A Python library for phylogenetic scripting, simulation, data processing and manipulation.

  Language:Python20763

• rcaelers/workrave

  Workrave is a program that assists in the recovery and prevention of Repetitive Strain Injury (RSI). The program frequently alerts you to take micro-pauses, rest breaks and restricts you to your daily limit.

  Language:C++1.6k202

• lh3/bioawk

  BWK awk modified for biological data

  Language:C590120

• Swordfish90/cool-retro-term

  A good looking terminal emulator which mimics the old cathode display...

  Language:QML22.2k845

• jts/sga

  de novo sequence assembler using string graphs

  Language:C++23782

• mcshane/capmq

  Simple program to cap mapping quality in a given alignment file

  Language:C32

• tskit-dev/msprime

  Simulate genealogical trees and genomic sequence data using population genetic models

  Language:Python17386

• vsbuffalo/bds-files

  Supplementary files for my book, "Bioinformatics Data Skills"

  Language:Python608362

• vsbuffalo/dotfiles

  My dotfiles, with simple install script.

  Language:Vim Script5311

• samtools/samtools

  Tools (written in C using htslib) for manipulating next-generation sequencing data

  Language:C1.6k577

• cooplab/popgen-notes

  Population genetics notes

  Language:PostScript638130

• konradjk/loftee

  Language:Perl17455

• jamescasbon/PyVCF

  A Variant Call Format reader for Python.

  Language:Python402200

• samtools/htslib

  C library for high-throughput sequencing data formats

  Language:C804446

• amplab/snap

  Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

  Language:C++28866

• dlang/phobos

  The standard library of the D programming language

  Language:D1.2k700

• lh3/foreign

  Modified or extracted from other programs

  Language:C1517

• samtools/bcftools

  This is the official development repository for BCFtools. See installation instructions and other documentation here http://samtools.github.io/bcftools/howtos/install.html

  Language:C662240