/seuratOnline

seuratOnline

Primary LanguageRGNU General Public License v3.0GPL-3.0

THIS APP REPOSITORY HAS BEEN PERMENANTLY MOVED TO SEURATWIZARD AND IS NO LONGER MAINTAINED HERE

PLEASE REFER TO NEW REPO FOR UPDATES AND DOCUMENTATION

seuratOnline: R Shiny interface for Seurat single-cell analysis library

Install:

devtools::install_github("aymanm/seuratOnline")

Run:

library(seuratOnline)
seuratOnline()

This will run on http://0.0.0.0:1234/ by default

To run on specific ip/port:

ip = '127.0.0.1'
portNumber = 5555
seuratOnline(ip,portNumber)

This will run on http://127.0.0.1:5555/

Screenshots:

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Acknowledgements:

  1. Rahul Satija, Andrew Butler and Paul Hoffman (2017). Seurat: Tools for Single Cell Genomics. R package version 2.2.1. https://CRAN.R-project.org/package=Seurat

  2. Satija Lab