Pinned Repositories
cs4255
Course material for the Algorithms for sequence-based bioinformatics course (CS4255) at TU Delft
ptolemy
safpred
Synteny-aware gene function prediction for bacteria using protein embeddings
vlpb-assembly-workshop
Adaptive-Soft-Sensor-Design
Github repo for the research paper titled "Integrating Adaptive Moving Window and Just-in-Time Learning Paradigms for Soft-Sensor Design"
ads1-notebooks
Copies of notebooks used in the practical sessions for Algorithms for DNA Sequencing
alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
altair
Declarative statistical visualization library for Python
incrementalLearning
SAFPredDB
Bacterial synteny database
aysunrhn's Repositories
aysunrhn/Adaptive-Soft-Sensor-Design
Github repo for the research paper titled "Integrating Adaptive Moving Window and Just-in-Time Learning Paradigms for Soft-Sensor Design"
aysunrhn/altair
Declarative statistical visualization library for Python
aysunrhn/SAFPredDB
Bacterial synteny database
aysunrhn/augur
Pipeline components for real-time phylodynamic analysis
aysunrhn/Awesome-CV
:page_facing_up: Awesome CV is LaTeX template for your outstanding job application
aysunrhn/bioinformatics_primer
Bioinformatics with Unix, bash, Make, Python, and parallel
aysunrhn/cdhit
Automatically exported from code.google.com/p/cdhit
aysunrhn/deeplearning-models
A collection of various deep learning architectures, models, and tips
aysunrhn/GenGraph
A repository for the GenGraph toolkit for the creation and manipulation of graph genomes
aysunrhn/genome-sketching
online notebooks for a review of genome sketching
aysunrhn/gg
The Stanford Builder
aysunrhn/gto
The genomics-proteomics toolkit
aysunrhn/Intrinsic-antimicrobial-resistance
A study of intrinsic and acquired antimicrobial resistance traits in enterococci
aysunrhn/introduction-to-bayesian-stats
aysunrhn/matplotlib-cheatsheet
Matplotlib 3.1 cheat sheet. From an upcoming book on matplotlib.
aysunrhn/minigraph
Proof-of-concept seq-to-graph mapper and graph generator
aysunrhn/nanoGPT
The simplest, fastest repository for training/finetuning medium-sized GPTs.
aysunrhn/NanoSim
Nanopore sequence read simulator
aysunrhn/panaroo
An updated pipeline for pan-genome investigation
aysunrhn/pathogen-informatics-training
aysunrhn/phd-thesis-template
A LaTeX template for creating beautiful PhD theses, originally created by TU Delft.
aysunrhn/PIRATE
A toolbox for pangenome analysis and threshold evaluation.
aysunrhn/ptolemy
aysunrhn/safpred
aysunrhn/SHIP
aysunrhn/SibeliaZ
aysunrhn/styles
Official repository for Citation Style Language (CSL) citation styles.
aysunrhn/TheHumanPangenome
A Strategy for Building and Using a Human Reference Pangenome
aysunrhn/vg
tools for working with genome variation graphs
aysunrhn/vlpb-assembly-workshop