b0risfosso/signal-sequence-prediction

predicting protein signal sequences using modern machine learning methods

Protein Signal Sequence Predictor

This repository contains a Transformer model to predict protein signal sequences from complete protein sequences.

Setting Up the Environment

Using Conda

1. Clone the repository:

   git clone git@github.com:b0risfosso/signal-sequence-prediction.git
   cd signal-sequence-prediction

2. Create and activate the conda environment:

   conda env create -f environment.yml
   conda activate protein_env

3. Run the main script:

   python src/main.py

Using Pip

1. Clone the repository:

   git clone git@github.com:b0risfosso/signal-sequence-prediction.git
   cd signal-sequence-prediction

2. Create a virtual environment and activate it:

   python -m venv venv
   source venv/bin/activate  # On Windows use `venv\Scripts\activate`

3. Install the dependencies:

   pip install -r requirements.txt

4. Run the main script:

   python src/main.py

Usage

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License

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