Pinned Repositories
arm-workshop-rsc2019
Materials for the rstudio::conf 2019 Advanced R Markdown workshop
autopvs1
An automatic classification tool for PVS1 interpretation of null variants
autospill
R package: AutoSpill algorithm for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data
CDSeq_R_Package
CDSeq R Package
CellR
CellR: single-cell RNA-Seq guided deconvolution of cellular composition from bulk-tissue RNA-Seq
cfdr
Implements conditional false-discovery rate hypothesis testing, used to perform high-dimensional hypothesis tests.
cfdr_pipeline
Pipeline to generate all results in manuscript 'Accurate error control in high dimensional association testing using conditional false discovery rates', by James Liley and Chris Wallace
cols4all
Colors for all (R package)
cyCombine
Robust Integration of Single-Cell Cytometry Datasets
CyTOF_analysis_Pipeline1
b8307038's Repositories
b8307038/autopvs1
An automatic classification tool for PVS1 interpretation of null variants
b8307038/autospill
R package: AutoSpill algorithm for calculating spillover coefficients to compensate or unmix high-parameter flow cytometry data
b8307038/CDSeq_R_Package
CDSeq R Package
b8307038/cols4all
Colors for all (R package)
b8307038/cyCombine
Robust Integration of Single-Cell Cytometry Datasets
b8307038/CyTOF_analysis_Pipeline1
b8307038/Cytoscape_workflows
collection of notebooks with different cytoscape workflows
b8307038/data.table
R's data.table package extends data.frame:
b8307038/dataviz
A book covering the fundamentals of data visualization
b8307038/dotfiles
Let's be honest: mostly Emacs.
b8307038/emacs-from-scratch
An example of a fully custom Emacs configuration developed live on YouTube!
b8307038/ERGO-II
ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
b8307038/forestplot
:exclamation: This is a read-only mirror of the CRAN R package repository. forestplot — Advanced Forest Plot Using 'grid' Graphics. Homepage: https://gforge.se/packages/ Report bugs for this package: https://github.com/gforge/forestplot/issues
b8307038/GSEA_R
Updated implementation of the GSEA-P R application for modern R distributions
b8307038/here
A simpler way to find your files
b8307038/jake-emacs
My personal Emacs configuation.
b8307038/MIND
Using Bulk Gene Expression to Estimate Cell-Type-Specific Gene Expression via Deconvolution
b8307038/Olivia
b8307038/patterns
A curated collection of Nextflow implementation patterns
b8307038/poisson.mash.alpha
An R package for Poisson multivariate adaptive shrinkage.
b8307038/preNivolumabOnNivolumab
EDA, QC, and DESeq2 / edgeR analysis of 109 RNA-seq samples of immunotherapy treatment
b8307038/pyrepseq
Python library for immune repertoire analysis
b8307038/Rodeo
b8307038/rstudio4edu-book
Organizing rstudio4edu project progress
b8307038/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
b8307038/stat545
A :book: on data wrangling, exploration, & analysis with R - created by Jenny Bryan, made with bookdown
b8307038/TCR-profiling-benchmark
b8307038/training
Nextflow training material
b8307038/variantValidator
Public repository for VariantValidator project
b8307038/WGCNA_Meta-analysis_BreastCancer
WGCNA meta-analysis of two breast cancer datasets