/QIIME2-IQR-Generator

The QIIME2-IQR-generator is a tool based on the QIIME2 kit used to calculate the interquartile range (IQR) of taxonomy relative abundance. Users only need to enter the genus-level name and the corresponding experimental abundance, and the tool will generate the IQR figure.

Primary LanguagePythonMIT LicenseMIT

QIIME2-IQR-generator

The QIIME2-IQR-generator is a tool based on the QIIME2 kit used to calculate the interquartile range (IQR) of taxonomy relative abundance. Users only need to enter the genus-level name and the corresponding experimental abundance, and the tool will generate the IQR figure.

  • Parameters
path = './'
#The folder path

fileName = 'level-6.csv'  
#NGS composition result in level-6 (.csv) after classifier analysis.
  • input()
Bacteria (Genus)?
#Blautia

ObserveValue (%)? 
#12
  • Input file - level-6.csv

Input file

  • Output figures

image