/RSO

Primary LanguagePythonMIT LicenseMIT

RSO binder design

This is a barebones modal app that designs binding sequences given a target pdb. The RSO method for binder sequence design utilizes the colabdesign repository and was developed by Chris Frank and team.

install and set up modal

pip install modal
python3 -m modal setup

clone repository

git clone https://github.com/coreyhowe999/RSO.git

run binder design

cd RSO
mv path/to/target.pdb RSO/target.pdb
modal run rso_modal.py --pdb target.pdb --numdesigns 10 --trajiters 100 --binderlen 100