Joaquin Dopazo

Pinned Repositories

babelomics
Language:Java41 28 317
bierapp
This interactive tool allows finding genes affected by deleterious variants that segregate along family pedigrees , case-controls or sporadic samples
Language:JavaScript54
cnvs
Copy Number Variation Server
Language:HTML3 13 01
CSVS
Population Variant Server
Language:JavaScript5 12 103
hipathia
Signaling pathway model
Language:R7 14 13
impuSARS
Software tool for the imputation of whole-genome SARS-CoV-2 sequences.
Language:Shell4 7 20
metagenomic-crc
Language:HTML4 7 03
MIGNON
Mechanistic integrative analysis of RNA-Seq data
Language:WDL7 9 16
SMAca
SMN1 copy-number and sequence variant analysis from next generation sequencing data
Language:Python22 8 46
TFTEA
Transcription Factor Target Enrichment Analysis
Language:R31

Joaquin Dopazo's Repositories

babelomics/SMAca
SMN1 copy-number and sequence variant analysis from next generation sequencing data
Language:Python22 8 46
babelomics/hipathia
Signaling pathway model
Language:R7 14 13
babelomics/MIGNON
Mechanistic integrative analysis of RNA-Seq data
Language:WDL7 9 16
babelomics/CSVS
Population Variant Server
Language:JavaScript5 12 103
babelomics/impuSARS
Software tool for the imputation of whole-genome SARS-CoV-2 sequences.
Language:Shell4 7 20
babelomics/metagenomic-crc
Language:HTML4 7 03
babelomics/metabolizer
Web tool to analyze transcriptomic (and mutational) data in the context of metabolic pathways
Language:HTML2 14 10
babelomics/signalization_prior_knowledge_based_nn
Language:Jupyter Notebook21
babelomics/iva
Interactive Variant Analysis tool, forked from OpenCB https://github.com/opencb/iva, documentation at http://docs.opencb.org/display/iva
Language:HTML13
babelomics/ivae_scorer
Language:Jupyter Notebook1 5 01
babelomics/MechACov
Language:TypeScript1 6 02
babelomics/sigprimednet
Language:Jupyter Notebook1
babelomics/Metabolica
Language:R00
babelomics/mmp-cancer
Backend services for MMP-Cancer
Language:Java00
babelomics/mmp-cancer-client
Frontend for MMP-Cancer
Language:TypeScript0 5 00
babelomics/SFtool
Secondary Findings tool
Language:Python00
babelomics/SPACNACS
Language:JavaScript0 6 00
babelomics/cellbase
High-Performance NoSQL database and RESTful web services to access to most relevant biological data
Language:Java6 01
babelomics/drexml-retinitis
Language:R
babelomics/hipathia_web
Web interface to HiPathia
Language:HTML
babelomics/jsorolla
JSorolla is a JavaScript Library for biological and genomic data visualization
Language:HTML7 01
babelomics/network-viewer
Language:HTML8 0
babelomics/ngscat2
Improved version of Next Generation Sequencing data Capture Assessment Tool (ngsCAT)
Language:Python4 13
babelomics/opencga
An Open Computational Genomics Analysis platform for big data processing and analysis in genomics
Language:Java6 01
babelomics/OpenEBench_CIBERER
babelomics/pathway-viewer
Code for pathway visualization and management
Language:HTML
babelomics/SpPGS
Language:Nextflow4 01
babelomics/sptest
Language:HiveQL6 01
babelomics/stevia-elements
Language:HTML8 02
babelomics/TCGA_SARC
Language:R