This is the source of the LINKDATAGEN manual:
- Website: linkdatagen.netlify.app
- PDF: linkdatagen-manual.pdf
- MS Word: linkdatagen-manual.docx
This is currently a work in progress and users should continue to download documentation at https://bioinf.wehi.edu.au/software/linkdatagen/
If you spot spelling/grammar mistakes in the manual, please submit an issue. Pull requests should be accompanied by the note: "I assign the copyright of this contribution to Melanie Bahlo".
Questions about the LINKDATAGEN software should be submitted to LINKDATAGEN Discussions. To lodge a bug report on LINKDATAGEN, please submit an issue to the LINKDATAGEN repository. Alternatively, you may email Melanie Bahlo at bahlo@wehi.edu.au{.email}.
This book is built with Quarto and can be previewed from within RStudio. This repository is set up to automatically update the online manual including the PDF and MS Word versions. If the website is not updating, please check the Actions have succeeded (a green tick).
In the future this may publish to the Bioinf website. It will work by committing changes to the WEHI-ResearchComputing/bioinf_rehost repository through a Github action. This is currently by using a token provided by Rick Tankard that is set to expire on Thu, 7 Sep 2023. If Rick is no longer around, the following actions should be take:
- A user, who will have their name attached to commits to bioinf_rehost, will have to generate a personal access token on Github with the repo scope only. It is recommended to create a token that expires, up to one year away.
- Copy the token and create and update the value of the repository secret REPO_ACCESS_TOKEN with this value.
- Edit the file .github/workflows/push_to_bioinf.yml, changing:
- instances of 'trickytank' to your user name on Github
- "Rick Tankard" to your name
For now this is pushing to a test Github repository to check the concept works.
The PDF and docx files will not be pushed to the bioinf website due to space considerations. Currently they are served from the Netlify website. This will have to be moved if the Netlify website is no longer updating.