bahlolab/moimix

Issues

• Confusion in how minor allele is identified in merged vcfs

  #36 opened 2 months ago
  0

• Error in Fws

  #35 opened 8 months ago
  0

• What R version can install correctly this package, I have try R3.2.5, R3.6.0 but can not install correctly

  #34 opened 2 years ago
  0

• problem with alleleCounts

  #33 opened 5 years ago
  1

• Error in getFws()

  #31 opened 6 years ago
  2

• allow coverage filtering when estimating MAF

  #29 opened 9 years ago
  0

• add more flexibility by allowing user to supply their own read counts matrix.

  #28 opened 9 years ago
  0

• store simulation results as suite of moimix objects

  #27 opened 9 years ago
  0

• package fails with latest release of SeqArray

  #26 opened 9 years ago
  0

• update extractPED to offer MOI incorporation

  #23 opened 9 years ago
  0

• Error in getTheta

  #22 opened 9 years ago
  0

• error in plot.bafMatrix after filtering

  #21 opened 9 years ago
  0

• replace `foreach` with BioC friendly package

  #20 opened 9 years ago
  0

• code tidy up, prepare for BioC

  #19 opened 9 years ago
  0

• model inference with MSE

  #18 opened 9 years ago
  0

• update and test simulation methods using alleleCounts object

  #17 opened 9 years ago
  0

• Bug: plot BAF matrix x-axis labelling

  #16 opened 9 years ago
  0

• Bug: need to create method for loading gds file in package

  #15 opened 9 years ago
  0

• create plot methods for BAF matrix class

  #14 opened 9 years ago
  0

• rewrite EM algorithm in C++

  #13 opened 9 years ago
  0

• Naming inconsistencies

  #12 opened 9 years ago
  0

• Barcode update to include latest Volkmann data

  #11 opened 9 years ago
  2

• Barcode function recode heterogenomic calls

  #10 opened 9 years ago
  0

• Extract barcode function

  #9 opened 9 years ago
  0

• Implement method in Li et al., 2007

  #8 opened 9 years ago
  0

• BAF variance estimation

  #7 opened 9 years ago
  0

• Baf around key loci

  #6 opened 9 years ago
  1

• New simulation study to include IBD?

  #5 opened 9 years ago
  1

• Start preparing vignette

  #4 opened 9 years ago
  0

• Create sliding window class to fit model in genomic regions

  #3 opened 9 years ago
  3

• unit tests

  #2 opened 9 years ago
  0

• follow-up on haplotype based methods

  #1 opened 9 years ago
  1