Pinned Repositories
bakerwm.github.com
R and Perl
ChIP-seq-analysis
ChIP-seq analysis notes from Ming Tang
data_science
collection of tools for data science
FastqCount
fastq 数据 reads、bases、N-bases、Q20、Q30、GC 统计
find_te_ins
Find Transposon Element insertions using long reads (nanopore), by alignment directly. (minimap2)
hiseq
Functions, tools for HiSeq data analysis
hiseq_demx
demultiplexing Illumina reads
hiseqr
What the Package Does (One Line, Title Case)
RNAseq
RNAseq data analysis pipeline
test_perl
exercise, learning perl
bakerwm's Repositories
bakerwm/data_science
collection of tools for data science
bakerwm/find_te_ins
Find Transposon Element insertions using long reads (nanopore), by alignment directly. (minimap2)
bakerwm/hiseq
Functions, tools for HiSeq data analysis
bakerwm/hiseq_demx
demultiplexing Illumina reads
bakerwm/hiseqr
What the Package Does (One Line, Title Case)
bakerwm/piRNA_pipe
pipeline for piRNA analysis
bakerwm/rnaseq_pipe
Aanalysis for RNAseq data, single file
bakerwm/snakemake-rnaseq-star
Snakemake workflow for RNAseq using STAR and DESeq2
bakerwm/yulab_learning
Materials and scripts, paper reading
bakerwm/academic-kickstart
📝 Easily create a beautiful website using Academic, Hugo, and Netlify
bakerwm/awesome-python
A curated list of awesome Python frameworks, libraries, software and resources
bakerwm/biogpt_local
test BioGPT
bakerwm/DNBelab_C_Series_HT_scRNA-analysis-software
An open source and flexible pipeline to analysis high-throughput DNBelab C Series single-cell RNA datasets
bakerwm/find_hbonds
Find Hydrogen Bonds using PyMOL
bakerwm/hipipe
hipipe scripts for HiSeq data processing
bakerwm/hiseq_dev
devel version. hiseq pipelines
bakerwm/hiseq_modules
Test functions for hiseq analysis
bakerwm/hiseq_shiny
group of shiny apps for hiseq package
bakerwm/hisequtil
a suite of tools for hiseq analysis
bakerwm/hts_y2h
[temp] analysis data from high throughput sequencing yeast 2-hybrid
bakerwm/make_metaplot
Generate metaplot using deeptools
bakerwm/nCov2019
query stats of infected coronavirus cases
bakerwm/pcf11_paper_scripts
bakerwm/pyflow-ATACseq
ATAC-seq snakemake pipeline
bakerwm/Python
All Algorithms implemented in Python
bakerwm/redo_public_data
code for reanalysis public data
bakerwm/RNA-seq-analysis
RNAseq analysis notes from Ming Tang
bakerwm/RNAi_screen_piRNA_genes
RNAi Screen for piRNA pathway genes
bakerwm/wmlib
tools for regular work, processing hiseq data
bakerwm/yulab_share_dev
dev version of yulab share website