Pinned Repositories
3H11_R12_SynCom
This repository contains data and code for the manuscript "Emergence and disruption of cooperativity in a denitrifying microbial community"
baliga-lab.github.com
organization page
cmonkey2
Python port of cMonkey, a machine-learning based method for clustering
cMonkeyNwInf
Network Inference for cMonkey output based on Inferelator and elastic-net
cygoose
Cytoscape plugin for Gaggle Integration
echidna
Experimental CuratIon and Data iNtegration Application
network_portal
A web-app for archiving and exploring gene-regulatory networks.
PRIME
Phenotype prediction tool
sequencelogo.js
Simple Javascript library for motif rendering
sygnal
SYstems Genetic Network AnaLysis (SYGNAL) pipeline
Baliga lab at the Institute for Systems Biology's Repositories
baliga-lab/cmonkey2
Python port of cMonkey, a machine-learning based method for clustering
baliga-lab/network_portal
A web-app for archiving and exploring gene-regulatory networks.
baliga-lab/3H11_R12_SynCom
This repository contains data and code for the manuscript "Emergence and disruption of cooperativity in a denitrifying microbial community"
baliga-lab/Global_Search
Code repository for the Coral Global Search project.
baliga-lab/miner3
mirror of matt wall's miner3
baliga-lab/tnseq_processing
TNSeq processing package for R
baliga-lab/pf1010-web
Aquaponics web application for Project Feed 1010
baliga-lab/tfbsdb2-DataProcess
Data process for constructing the transcription factor (TF) to target gene interactions database.
baliga-lab/bwa_pipeline
Genomics pipeline based on Burrows Wheeler Aligment
baliga-lab/Cancer-miRNA-Regulatory-Network
A database containing the predictions for the Cancer miRNA-Regulatory Network.
baliga-lab/duffy_scripts
Automation scripts for running DuffyNGS based RNA seq analysis
baliga-lab/firm2
Integrated, more user-friendly version of the FIRM pipeline
baliga-lab/GBM_Atlas
Repository for the manuscript titled An atlas of causal and mechanistic drivers of interpatient heterogeneity in gliomas predicts treatment response based on cell states
baliga-lab/glioma_web
Website backing publication.
baliga-lab/halodata
Unified Halobacterium application
baliga-lab/Metabolic-Model-of-Syntrophy-for-Dv-and-Mm
Syntrophic community model generated by integrating genome-scale metabolic network models of DvH and Mmp.
baliga-lab/miner_webapi
Generic data interface for ananlysis data generated with MINER
baliga-lab/mirvestigator-rust
Standalone implementation of miRvestigator in Rust
baliga-lab/miRvestigator_www
A web server version of the miRvestigator framework.
baliga-lab/mmSYGNAL-risk-prediction-models
ML risk prediction models generated from mmSYGNAL
baliga-lab/NanoVar-Micro
Nanopore Microbial Variant Calling Pipeline
baliga-lab/resr_pipeline
SNP calling pipeline based on ResR
baliga-lab/RNASeq_Diatom
Code repository for the RNA Seq on GEO Diatom data sets.
baliga-lab/rnaseq_starsalmon_slurm
RNA-Seq pipeline based on STAR Salmon for SLURM clusters
baliga-lab/SNAPPER
SNP identification work flow
baliga-lab/tcell_web
Mtb infection T cell regulatory network web site.
baliga-lab/tfbsdb
Django web application to search for transcription factor binding sites
baliga-lab/tfbsdb2
New version of Transcription Factor Binding Site database
baliga-lab/wp_minerapi
Wordpress plugin to display data from a MINER web API
baliga-lab/wp_tfbsdb2
Wordpress plugin for integrating TFBSDB2 API