baraaorabi
Computer Science PhD; working mostly on a 4-character alphabet.
10x GenomicsVancouver, BC, Canada
Pinned Repositories
Badread
a long read simulator that can imitate many types of read problems
baraaorabi-cv
baraaorabi.github.io
Theme forked from https://github.com/daattali/beautiful-jekyll
BilkentCompGen.github.io
CS421_PA1
Client-server VendingMachine simulator
freddie-sc
Single-cell enabled Freddie (work in progress)
calib
Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
freddie
Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing
scTagger
10x single cell short- and long-read RNA sequencing
tksm
Very modular, very cool long-read transcriptomic simulator
baraaorabi's Repositories
baraaorabi/CS421_PA1
Client-server VendingMachine simulator
baraaorabi/Badread
a long read simulator that can imitate many types of read problems
baraaorabi/freddie-sc
Single-cell enabled Freddie (work in progress)
baraaorabi/baraaorabi-cv
baraaorabi/baraaorabi.github.io
Theme forked from https://github.com/daattali/beautiful-jekyll
baraaorabi/BilkentCompGen.github.io
baraaorabi/BioinformaticsHomeworks
cs481 hws here, private till end of semester
baraaorabi/chromeqc
ChromeQC: Summarize sequencing library quality of 10x Genomics Chromium linked reads
baraaorabi/cv
baraaorabi/flair
Full-Length Alternative Isoform analysis of RNA
baraaorabi/hackseq19
hackseq 2019 - [*]-omics hackathon. Vancouver, BC
baraaorabi/hs18
hackseq18 sidesite
baraaorabi/html_plotly_rendering
Trying to render HTML with plotly graphs
baraaorabi/LIQA
Long-read Isoform Quantification and Analysis
baraaorabi/LTR-vis
Long transcriptomic reads visualizer
baraaorabi/minion_multiQC
multi-tool QC for minion data
baraaorabi/minion_qc
Quality control for MinION sequencing data
baraaorabi/mrsfast
mrsFAST: micro-read substitution-only Fast Alignment Search Tool
baraaorabi/NA12878
Data and analysis for NA12878 genome on nanopore
baraaorabi/NanoSim
Nanopore sequence read simulator
baraaorabi/p5
CS342 Fall 2015 Project 5
baraaorabi/scFreddie-bench