Repository with the code used for B105572 MSc thesis
This repository contains the code I used for my project.
CODE_AND_OBJECTS folder has 3 folders:
- Replication_DN_Iorio2010 - contains the scripts used to replicate the MANTRA drug network, as mentioned in Section 2.1.
- Clustering - contains the scripts used to perform the Sensitivity analysis of MANTRA regarding the clustering step, as mentioned in Section 2.2.
- QueryingDvD - contains the scripts to find drug repurposing candidates for liver fibrosis using DvD R package, as mentioned in Section 2.3
DissertationPlots folder contains:
- All the plots generated in the dissertation
- A script to generate them : GenerateAllPlots.R
To run the scripts, you must set your current directory to the directory of the R file.
R version : 3.4.0